Locus 717

Sequence ID 2L_DroMel_CAF1
Location 2,087,503 – 2,087,596
Length 93
Max. P 0.995407
window1176

overview

Window 6

Location 2,087,503 – 2,087,596
Length 93
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 77.53
Mean single sequence MFE -17.33
Consensus MFE -9.88
Energy contribution -10.36
Covariance contribution 0.48
Combinations/Pair 1.42
Mean z-score -2.71
Structure conservation index 0.57
SVM decision value 2.57
SVM RNA-class probability 0.995407
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2087503 93 + 22407834
CCAAUCAAUCAUCGAAAUGCUAAUGCCGUAGAUGACUUCAUCAUCUGCCGGCAAUUCAUU-----CCCUUCAC------A--UCCAUUCUUAUCAUUUUAAUGCGA
.........(((..(((((.(((((((((((((((.....))))))).))))).......-----........------.--.......))).)))))..)))... ( -19.00)
>DroSec_CAF1 104651 93 + 1
CCAAUCAAUCAUCGAAAUGCUAAUGCUGUAGAUGACUUCAUCAUCUGCCGGCAAUUCAUU-----CCCCUCAC------U--UCCAUUCUUAUCAUUUUAAUGCGA
.........(((..(((((.(((((((((((((((.....))))))).))))).......-----........------.--.......))).)))))..)))... ( -16.80)
>DroSim_CAF1 104432 93 + 1
CCAAUCAAUCAUCGAAAUGCUAAUGCUGUAGAUGACUUCAUCAUCUGCCGGCAAUUCGUU-----CCCUUCAC------U--UCCAUUCUUAUCAUUUUAAUGCGA
.........(((..(((((.(((((((((((((((.....))))))).)))))....((.-----......))------.--.......))).)))))..)))... ( -17.70)
>DroEre_CAF1 107160 101 + 1
CCAAUCAAUCAUCGAAAUGCUAAUGCUGCUGAUGACUUCAUCAUUGGCCCGCAAUUCCCU-----CCCCUCACACUCGCAGUUUCAUGCUCAGCAUUUUAAUGCGA
.........(((..(((((((..(((.((..((((.....))))..))..))).......-----............(((......)))..)))))))..)))... ( -24.20)
>DroAna_CAF1 105956 100 + 1
CCCAUCAAUCAUUCUAAUGCUUAUCCUAUUGAUGACUUCAUCAUGUCCAAGUAAUUCAUUGAAGUCCCA--ACAAUCGUACCUUCAUACUUAUUAUUAUAUU----
.............................(((((....)))))......((((((....(((((.....--..........))))).....)))))).....---- (  -8.96)
>consensus
CCAAUCAAUCAUCGAAAUGCUAAUGCUGUAGAUGACUUCAUCAUCUGCCGGCAAUUCAUU_____CCCCUCAC______A__UCCAUUCUUAUCAUUUUAAUGCGA
.......................((((((((((((.....))))))).)))))..................................................... ( -9.88 = -10.36 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:45 2006