| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,059,556 – 20,059,653 |
| Length | 97 |
| Max. P | 0.718550 |
| Location | 20,059,556 – 20,059,653 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 81.37 |
| Mean single sequence MFE | -31.92 |
| Consensus MFE | -21.16 |
| Energy contribution | -21.92 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.718550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20059556 97 - 22407834 GCUGGGCCGCCGGGGUGCCGUACUCGUCCGAAAAGGGCAGAGUGCCACUCAGGCUGCAAGAUAUGAGUAUAUUGCUAAGUUAUCUUCGUAGGAGAAU ......(((((.(((((..((((((((((.....)))).))))))))))).)))(((((((((..(((.....)))....)))))).)))))..... ( -34.40) >DroSec_CAF1 1725 97 - 1 GCUGGGCCGCCGGGGUGCCGUACUCGUCCGAAAAGGGUAGAGUGCCACUCAGGCUGCAAGAUAUGAGUAAAUUACUAAGUAAUCUUCGUAGGAGAAU .((..((.(((.(((((..((((((..((.....))...))))))))))).))).)).)).((((((...(((((...))))).))))))....... ( -28.90) >DroSim_CAF1 1738 97 - 1 GCUGGGCCGCCGGGGUGCCGUACUCGUCCGAAAAGGGCAGAGUGCCACUCAGGCUGCAUGAUAUGAGUAAAUUACUAAGUAAUCUUCGUAGGAUAAU .....((.(((.(((((..((((((((((.....)))).))))))))))).))).))((..((((((...(((((...))))).))))))..))... ( -32.30) >DroEre_CAF1 1803 97 - 1 GCUGGGCCGCCGGGGUUCCGUACUCGUCUGAAAAGGGCAGAGUACCACUAAGGCUGCAAGAUAUGAGUGUUUUACUAUUUCAUUUUAGUAGGAGAAC .((..((.(((..(((...((((((((((.....)))).)))))).)))..))).)).)).......(.((((((((........)))))))).).. ( -28.60) >DroYak_CAF1 1782 96 - 1 GCUGGGCAGCCGGGGUUCCGUACUCGUCGGAAAAGGGCAGAGUGCCACUCAGGCUGCAAGAAAUGGAUAUUUUUCUAUUUCAUCUUAUU-GGAGAAU .....((((((.((((...(((((((((.......))).)))))).)))).))))))..((((((((......)))))))).((((...-.)))).. ( -36.30) >DroAna_CAF1 1460 91 - 1 GAUCGGCGGCCGAGGUGCCGUAUUCAUCCGAAAACGGCAGAGUUCCACUCAGGCUGUCAAAAGUG--UUUAUUGAAAAAUGAUU----CAGGAAUAU ....(((((((....((((((.(((....))).))))))(((.....))).)))))))....(((--(((.(((((......))----))))))))) ( -31.00) >consensus GCUGGGCCGCCGGGGUGCCGUACUCGUCCGAAAAGGGCAGAGUGCCACUCAGGCUGCAAGAUAUGAGUAUAUUACUAAGUAAUCUUCGUAGGAGAAU .....((.(((.(((((..((((((((((.....)))).))))))))))).))).))........................................ (-21.16 = -21.92 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:10 2006