Locus 7168

Sequence ID 2L_DroMel_CAF1
Location 20,049,181 – 20,049,283
Length 102
Max. P 0.869238
window11446

overview

Window 6

Location 20,049,181 – 20,049,283
Length 102
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 74.54
Mean single sequence MFE -23.62
Consensus MFE -9.24
Energy contribution -10.64
Covariance contribution 1.40
Combinations/Pair 1.36
Mean z-score -1.99
Structure conservation index 0.39
SVM decision value 0.86
SVM RNA-class probability 0.869238
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20049181 102 - 22407834
-----UAAAAAUAAUCAAUACAACUGCAAUUUCUAGCUCGCACUCAGCACAGACGUGAGCUAGACAAUGCAAA---------GGACCCU----CAUGUUUUUCACAUCAAAUGUGAGGCC
-----...................((((.(.((((((((((..((......)).)))))))))).).))))..---------....(((----(((((((........)))))))))).. ( -29.20)
>DroSec_CAF1 231522 102 - 1
-----UAAAAAUAAUCAAUACAACUGCAAUUUCUAGCUUGUACCCAGCACAGACGUGAGCUAGACAAUGCAAA---------GGACCCU----CAUGUUUUUCACAUCAAAUGUGAGGAC
-----...................((((.(.(((((((..(.............)..))))))).).))))..---------....(((----(((((((........)))))))))).. ( -24.12)
>DroEre_CAF1 226321 100 - 1
-----UUAAAAUAAUCAAUACAACUGCAAUUUCU-GCUCGUCCUCAGCAUAGACGUGUGCUAGACAAUGCAAA---------GGAC-CU----CAUGUUUUUCACAUCAAGUGCCAGGCC
-----....................(((.....)-))..(((((..((((.(.(........).).))))..)---------))))-..----...((((..(((.....)))..)))). ( -15.10)
>DroYak_CAF1 225333 102 - 1
-----UAAAAAUAAUCAAUACAACUGCAAUUUCUGGCUCGUCCUCAGCAUAGACGUGUGCUAGACAAUGCAAA---------GGACUCU----CAUGUUUUUCACAUCAAGUGUGAGGCC
-----...................((((.(.((((((.((((.........))))...)))))).).))))..---------((.(.((----((..(((........)))..))))))) ( -23.20)
>DroAna_CAF1 242509 115 - 1
UUUGCUAAAAAAAAUCGAUG-AUAUGAAAUUAUUAUAU----CCCACCCCAGACAGGGGUUAGACACUGCAGGCGGAAUGUUGGAACCUUUCCAAUGCAUUUCAUAUCCUAUGCAAAAUA
(((((.........((...(-((((((.....))))))----)..(((((.....)))))..))......(((.(((((((((((.....))))..)))))))....)))..)))))... ( -26.50)
>consensus
_____UAAAAAUAAUCAAUACAACUGCAAUUUCUAGCUCGUACUCAGCACAGACGUGAGCUAGACAAUGCAAA_________GGACCCU____CAUGUUUUUCACAUCAAAUGUGAGGCC
........................((((.(.(((((((((...............))))))))).).))))............................((((((((...)))))))).. ( -9.24 = -10.64 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:09 2006