| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,043,965 – 20,044,056 |
| Length | 91 |
| Max. P | 0.878672 |
| Location | 20,043,965 – 20,044,056 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 86.16 |
| Mean single sequence MFE | -20.68 |
| Consensus MFE | -15.39 |
| Energy contribution | -16.20 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.878672 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20043965 91 + 22407834 AAGUUGGCUAAAAACUUUUUGUCCAGCAACUUUUUAACCUUUUACGCUGCCAACUCAGUUGUUAAUGCCAUUUGAGUAACUCUGCAGAUUU ..(((((.((((.....)))).)))))...................((((..((((((.((.......)).))))))......)))).... ( -15.60) >DroSec_CAF1 226230 90 + 1 AAGUUGGCUACAAACUUU-UGGCCAGCAACUUUUUAACCUUUUACGCUGCCAACUCAGUUGUUAAUGCCAUUUGAGUAACUCGGCAGAUUU ..((((((((........-))))))))...................(((((.((((((.((.......)).)))))).....))))).... ( -23.90) >DroEre_CAF1 221168 89 + 1 AAGUUUGCUGAAAACUU--UGGCCAACAUGUUGGUAACCUUUUGCGCUGCCAACUCAGUUGUAAAUGACAUUUGAGUAACUCGGCAGAUUU (((((((((((......--(((((((....)))((((....))))...))))((((((.(((.....))).))))))...))))))))))) ( -25.70) >DroYak_CAF1 220205 84 + 1 AAGUUUGCUAAAAACUU--UGGCAAACAUCUUGUUAACCUUUUACGCUGCCAACUCAGUUGUUAAUUUCUUUUGAGUAA-----CAGAUUU ..(((((((((.....)--))))))))...................(((...((((((..(.......)..))))))..-----))).... ( -17.50) >consensus AAGUUGGCUAAAAACUU__UGGCCAACAACUUGUUAACCUUUUACGCUGCCAACUCAGUUGUUAAUGCCAUUUGAGUAACUCGGCAGAUUU ..((((((((.........))))))))...................(((((.((((((.((.......)).)))))).....))))).... (-15.39 = -16.20 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:06 2006