Locus 7164

Sequence ID 2L_DroMel_CAF1
Location 20,043,521 – 20,043,630
Length 109
Max. P 0.829788
window11442

overview

Window 2

Location 20,043,521 – 20,043,630
Length 109
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 74.01
Mean single sequence MFE -35.80
Consensus MFE -10.92
Energy contribution -13.88
Covariance contribution 2.96
Combinations/Pair 1.08
Mean z-score -1.89
Structure conservation index 0.31
SVM decision value 0.71
SVM RNA-class probability 0.829788
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20043521 109 + 22407834
AUUGGCACAUUGGCUGCACUUUGUGGU--GCUCCAUGGCCGAGGGAUCACUCG---------GCUCACCUGGCGUCGGAGGCAGCUACGGAGUUAAUAGCAACUUAACUUUGAUUAUAAU
..........(((((((.(((((...(--(((...((((((((......))))---------)).))...)))).))))))))))))(((((((((.......)))))))))........ ( -38.70)
>DroSec_CAF1 225788 108 + 1
AUUGGCACAUUGGCUGCACUUUGUGCU--GCUCCGUGGCC-AGGGAUCACUCG---------GCUCACCUGGCGUUGGUGGCAGCUACGGAGUUAAUAGCAACUUAACUUUGAUUAUAAU
............((((.((((((((((--((((((..(((-(((((((....)---------).)).))))))..))).)))))).)))))))...)))).................... ( -37.00)
>DroEre_CAF1 220718 108 + 1
AUUGGCACAUUGGCUGCACUUUGUGGU--GCUCCGUGGCC-AGGGAUCACUCA---------GGUCACCUGGCGUUGGUGGCUACUUCGGAGUUAAUAGCAACUUAGCUUUGAUUAUAAU
..((((.(((..((.(((((....)))--))......(((-(((((((.....---------)))).))))))))..)))))))..((((((((((.......))))))))))....... ( -42.50)
>DroYak_CAF1 219769 117 + 1
AUUGGCACAUUGGCUGCACUUUGUGGU--GCUCCGAGGCC-AGGGAUCACCCAGCUCACCCAGCUCACCUGGCGCUGUGGGCAACUUCGGAGUUAAUAGCAACUCAACUUUGAUUAUAAU
..((((...((((..(((((....)))--)).)))).)))-)(((....))).((((((((((.....))))....))))))....((((((((...........))))))))....... ( -38.60)
>DroAna_CAF1 235566 86 + 1
AUUGGCACAUUGGCUGCACUUUCUGAUCUCCCCCAUGGACAUUGGAUUGAAUG---------GCCAACCUGGGCUUGGAAGC-------------------------CUUUGAAAAUGAU
...(((...(((((((..(..((..((.(((.....))).))..))..)..))---------)))))((.......))..))-------------------------)............ ( -22.20)
>consensus
AUUGGCACAUUGGCUGCACUUUGUGGU__GCUCCGUGGCC_AGGGAUCACUCG_________GCUCACCUGGCGUUGGAGGCAACUACGGAGUUAAUAGCAACUUAACUUUGAUUAUAAU
.....((((..(......)..))))....((((((..(((.(((.......................))))))..))).))).....(((((((((.......)))))))))........ (-10.92 = -13.88 +   2.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:05 2006