Locus 7156

Sequence ID 2L_DroMel_CAF1
Location 20,034,103 – 20,034,212
Length 109
Max. P 0.843023
window11425

overview

Window 5

Location 20,034,103 – 20,034,212
Length 109
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.97
Mean single sequence MFE -35.05
Consensus MFE -16.45
Energy contribution -17.87
Covariance contribution 1.42
Combinations/Pair 1.20
Mean z-score -2.13
Structure conservation index 0.47
SVM decision value 0.76
SVM RNA-class probability 0.843023
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20034103 109 - 22407834
CGCUUUAAAGGCUUUUAUGCCGCC---AAAAAAAUGGGGGC-AG--CGCUAAUGGGUGGCGGCUG---AAAGUCAAAAGGCACCAGCCCUG-AAUGA-UGUGAUUCAGCUGGCAACUUAA
.(((((...((((((((.((((((---(......(((.(..-..--).))).....)))))))))---))))))..))))).(((((..((-(((..-....))))))))))........ ( -39.90)
>DroSec_CAF1 216470 112 - 1
CGCUUUAAAGGCUUUUAUGCCCCCCCAAAAAAAAUGGGGGC-AA--CGCUAAUGGGUGGCGGCUG---AAAGUCAAAAGGCAACAGCCCUG-AAUGA-UGUUAUUCAGCUGGCAACUUAA
.(((((...((((((((.(((((((((.......)))))).-..--.((((.....)))))))))---))))))..)))))....((((((-((((.-...)))))))..)))....... ( -41.40)
>DroSim_CAF1 213916 112 - 1
CGCUUUAAAGGCUUUUAUGCCCCAAAAAAAAAAAAUGGGGC-AA--CGCUAAUGGGUGGCGGCUG---AAAGUCAAAAGGCAACAGCCCUG-AAUGA-UGUGAUUCAGCUGGCAACUUAA
.(((((...(((((((((((((((...........))))))-).--(((((.....)))))..))---))))))..)))))....((((((-(((..-....))))))..)))....... ( -38.70)
>DroEre_CAF1 211163 112 - 1
CGCUUUAAAGGCUUUUAUACCCCC---GAAAAAAUGGGGGCUAAUGGGCUAAUGGGUGGCGGCGG---AAGGUCAAAAGGCCCCGGCCAUG-AAUGA-UGUGAUUCAGCUGGCAACUUAA
((((.....(((((.....(((((---(......)))))).....))))).......)))).(((---..((((....)))))))((((((-(((..-....)))))..))))....... ( -35.50)
>DroYak_CAF1 210003 96 - 1
CGCUUUAAAGGCUUUUAUACCCCC---GAAAAAAAGGGGC--AC--UGCUAAUGGGUGGCGGCGG---AAAGUCAAAAGACUGUGGCCCUG-AAGGA-UGUGAUUCAG------------
.(((.....)))........((((---........))))(--((--(.((...((((.(((((..---..........).)))).))))..-.)).)-.)))......------------ ( -24.80)
>DroAna_CAF1 227146 113 - 1
GGUUUUAAGGCCUCUUUCGUACCA---GAAAAAAGUGGACC-AA--CUCUAAUGGGUGGCGGCGGCAGUAAGCCAAAGGACC-UGACUCUGCAAUGGGGGCAAGGCAGUCGGAAAUUUAA
((((((...((((((..(((..((---((.....((.(.((-(.--(((....))))))).))(((.....)))........-....))))..)))..))..)))).....))))))... ( -30.00)
>consensus
CGCUUUAAAGGCUUUUAUGCCCCC___AAAAAAAUGGGGGC_AA__CGCUAAUGGGUGGCGGCGG___AAAGUCAAAAGGCAACAGCCCUG_AAUGA_UGUGAUUCAGCUGGCAACUUAA
.(((.....)))......((((((...........))))))......(((..(((((.(((((........)))....(((....)))...........)).)))))...)))....... (-16.45 = -17.87 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:50 2006