| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,983,568 – 19,983,658 |
| Length | 90 |
| Max. P | 0.660365 |
| Location | 19,983,568 – 19,983,658 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 86.10 |
| Mean single sequence MFE | -33.55 |
| Consensus MFE | -21.86 |
| Energy contribution | -22.60 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19983568 90 - 22407834 GUUACCGGUUGUUAUUCUUGCGCGUUUUGUUGUCAGUCGUCUGGCAAGAAUGAAAUGGCCA-----------------AGGAGCCAAGAAAAGCAGCUGUUGCUGCU (((.((((((.(((((((((((((......)))(((....)))))))))))))...)))).-----------------.))))).......((((((....)))))) ( -28.90) >DroSec_CAF1 166440 102 - 1 GUUACCGGUUGUUAUUCUUGCGCGUUUUGUUGUCAGU---CUGGCCAGAAUGAAAUGGCCAGCACGAGCACAUA--GUAGGAGCCAAGAAAAGCAGCUGUUGCUGCU ((...((((((((.((((((.((...(((((((..((---(((((((........))))))).))..))).)))--).....)))))))).))))))))..)).... ( -37.30) >DroSim_CAF1 168993 102 - 1 GUUACCGGUUGUUAUUCUUGCGCGUUUUGUUGUCAGU---CUGGCCAGAAUGAAAUGGCCAGCACGAGCACAUA--GUAGGAGCCAAGAAAAGCAGCUGUUGCUGCU ((...((((((((.((((((.((...(((((((..((---(((((((........))))))).))..))).)))--).....)))))))).))))))))..)).... ( -37.30) >DroEre_CAF1 164499 103 - 1 GUUACCGGUUCUUAUUCUGGCACGUUUUGUUGUCAGU---CGGGCAACAAUCAAAUGGCCAGCACG-GCACAUAUUGUAGGAGCCAAGAAAAGCAGCUGUUGCUGCU ......(((((((((.(((((.((((((((((((...---..)))))))...))))))))))....-.........)))))))))......((((((....)))))) ( -37.54) >DroYak_CAF1 165367 98 - 1 GUUACCGGUUCUUAUUCUUUCGCGUUUUGUUGUCAGU---CUGGCACCAAUCAAACGGCCAGCACGAGCACAU------GAAGCCAAGAAAAGCAGCUGUUGCUGCU .................((((..((((..((((..((---(((((............))))).))..))).).------.))))...))))((((((....)))))) ( -26.70) >consensus GUUACCGGUUGUUAUUCUUGCGCGUUUUGUUGUCAGU___CUGGCAAGAAUGAAAUGGCCAGCACGAGCACAUA__GUAGGAGCCAAGAAAAGCAGCUGUUGCUGCU ......((((.........((.((((((((((((((....)))))...)))))))))))..((....))............))))......((((((....)))))) (-21.86 = -22.60 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:10 2006