Locus 713

Sequence ID 2L_DroMel_CAF1
Location 2,074,509 – 2,074,620
Length 111
Max. P 0.683140
window1168

overview

Window 8

Location 2,074,509 – 2,074,620
Length 111
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 86.37
Mean single sequence MFE -36.88
Consensus MFE -29.39
Energy contribution -31.43
Covariance contribution 2.04
Combinations/Pair 1.11
Mean z-score -2.17
Structure conservation index 0.80
SVM decision value 0.31
SVM RNA-class probability 0.683140
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2074509 111 - 22407834
GAAGCAGUCUGGCUUGGACUGGCGGGGUCUGAGAAUCAGACUCUCAGAGCAGGAAACUAGGUUUCAGGUUAAUUAAAUUUUAUUCUAGUUGCCGUCCAGCCGGAAGAGGCG
...((..(((((((.((((.(((((((((((.....))))))))..........(((((((....(((((.....)))))...)))))))))))))))))))))....)). ( -43.50)
>DroSec_CAF1 91513 111 - 1
GAAGCAGUCUGGCUUGGACUGGCGGGGUCUGAGAAUCGGGCUCUUAGAGCAGGAAACUAGGUUUCAGGUUAAUUAAAUUUUAUUCUAGUUGCCGUCCACCCGGAAGAGGCG
...((..(((((..(((((.(((((((((((.....))))))))..........(((((((....(((((.....)))))...))))))))))))))).)))))....)). ( -37.50)
>DroSim_CAF1 90841 111 - 1
GAAGCAGUCUGGCUUGGACUGGCGGGGUCUGAGAAUCGGGCUCUUAGAGCAGGAAACUAGGUUUCAGGUUAAUUAAAUUUUAUUCUAGUUGCCGUCCAGCCGGAAGAGGCG
...((..(((((((.((((.(((((((((((.....))))))))..........(((((((....(((((.....)))))...)))))))))))))))))))))....)). ( -42.20)
>DroEre_CAF1 93892 111 - 1
GAAGCAGUCUGGCUCGGACUGGCGGGGUCUGAGAACCGGGCUCUAAGAGCAGAAAACUAGGUUUCAGGUUAAUUAAAUUUUAUUCUAGUUGCCGUCCAGCCGGAAGAGGCG
...((..(((((((.((((.(((((((((((.....))))))))..........(((((((....(((((.....)))))...)))))))))))))))))))))....)). ( -42.20)
>DroYak_CAF1 95286 111 - 1
GAAGCAGUCUGGCUUGGACUGUCGGGGUCUGAGAACCUGGCUCUUAGAGCACAAAACUAGGUUUCAGGUUAAUUAAAUUUUAUUCUAGUUGCCGUCCAGCCGGAAGAGGCG
...((..(((((((.((((.((...(.(((((((.......))))))).)....(((((((....(((((.....)))))...))))))))).)))))))))))....)). ( -36.10)
>DroPer_CAF1 136898 90 - 1
GAAGUAGUCUGGCUG-------UUGGCUCU-------UGGCUCUUGGAGCA-AAAACUAGGUUUCAGGUUAAUUAAAUUUUAUUUUAGUUGCAGAAAAGCCGCAG------
.(((.((((......-------..))))))-------)((((((((((((.-........)))))))).((((((((......))))))))......))))....------ ( -19.80)
>consensus
GAAGCAGUCUGGCUUGGACUGGCGGGGUCUGAGAAUCGGGCUCUUAGAGCAGAAAACUAGGUUUCAGGUUAAUUAAAUUUUAUUCUAGUUGCCGUCCAGCCGGAAGAGGCG
...((..(((((((.((((.(((((((((((.....))))))))..........(((((((....(((((.....)))))...)))))))))))))))))))))....)). (-29.39 = -31.43 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:37 2006