Locus 7128

Sequence ID 2L_DroMel_CAF1
Location 19,982,645 – 19,982,735
Length 90
Max. P 0.812266
window11378

overview

Window 8

Location 19,982,645 – 19,982,735
Length 90
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 90.68
Mean single sequence MFE -17.76
Consensus MFE -15.03
Energy contribution -15.18
Covariance contribution 0.14
Combinations/Pair 1.17
Mean z-score -1.99
Structure conservation index 0.85
SVM decision value 0.65
SVM RNA-class probability 0.812266
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19982645 90 + 22407834
AAGAGAUUGCCGAGCCA---AAAAAUAAGAGGCAAAUAUCUUGUUUGCAUAUUUCUGCGUCAGCCAGAAAUAAUAAUUAAAAGCAAACCAACA
((((..(((((......---..........)))))...))))((((((.(((((((((....).))))))))(....)....))))))..... ( -19.09)
>DroSec_CAF1 165534 90 + 1
AAGAGAUUGCCGAGCCA---AAAAAUGAGAGGCAAAUAUCUUGUUUGCAUAUUUCUGCGUCAGCCAGAAAUAAUAAUUAAAAGCAAACCAACA
((((..(((((...(((---.....)).).)))))...))))((((((.(((((((((....).))))))))(....)....))))))..... ( -19.70)
>DroSim_CAF1 168063 90 + 1
AAGAGAUUGCCGAGCCA---AAAAAUGAGAGGCAAAUAUCUUGUUUGCAUAUUUCUGCGUCAGCCAGAAAUAAUAAUUAAAAGCAAACCAACA
((((..(((((...(((---.....)).).)))))...))))((((((.(((((((((....).))))))))(....)....))))))..... ( -19.70)
>DroEre_CAF1 163589 88 + 1
AAGAGAUUGCCGAGCUA---AAAAAUGAGAGGCAAAUAUCUUGUUUGCAUAUUUCUGCUUCAGCCAGAAAUAAUAAUUAAAUGCAAACCAA--
((((..(((((...((.---.......)).)))))...))))((((((((((((((((....).)))))))).........)))))))...-- ( -22.40)
>DroYak_CAF1 164475 88 + 1
AAGAGAUUGUCGAGCCA---AAAAAUGAGAGGCAAAUAUAUUGUUUGCAUAUUUCUGCGUCAGCCAGAUAUAAUAAUUAAAAGCAAGCCCA--
.......((((..((..---......((((.((((((.....))))))...)))).......))..)))).....................-- ( -12.26)
>DroAna_CAF1 166512 93 + 1
GAGAGAUUUCCGAGCUACAAAAAAGUGAGGGGAAAAAAGCUUGUUUGCAUAUUUCUGCGUCAGCCAGAAACAAUAAUUAAAAACAAACCCACA
......(..((..(((.......)))..))..).....((......))...(((((((....).))))))....................... ( -13.40)
>consensus
AAGAGAUUGCCGAGCCA___AAAAAUGAGAGGCAAAUAUCUUGUUUGCAUAUUUCUGCGUCAGCCAGAAAUAAUAAUUAAAAGCAAACCAACA
((((..(((((...................)))))...))))((((((.(((((((((....).))))))))..........))))))..... (-15.03 = -15.18 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:08 2006