Locus 711

Sequence ID 2L_DroMel_CAF1
Location 2,067,477 – 2,067,570
Length 93
Max. P 0.900326
window1165

overview

Window 5

Location 2,067,477 – 2,067,570
Length 93
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 81.45
Mean single sequence MFE -32.07
Consensus MFE -21.79
Energy contribution -22.77
Covariance contribution 0.98
Combinations/Pair 1.15
Mean z-score -2.63
Structure conservation index 0.68
SVM decision value 1.01
SVM RNA-class probability 0.900326
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2067477 93 - 22407834
GUC------------GCUCCUGCGGGGG-------AAAGCAAAAAGUUGUGGCCAAAGUGGUUACAAAUCAAAUCAAAAGACCCGGCAAGAUGAAUGGUUGGCAGGAGGG-----GC
(((------------.((((((((((..-------...........((((((((.....))))))))..............)))(((..........))).))))))).)-----)) ( -31.33)
>DroSec_CAF1 84667 93 - 1
GUC------------GCUCCUGCGGGGG-------AAAGCAAAAAGUUGUGGCCAAAGUGGUUACAAAUCAAAUCAAAAGACCCGGCAAGAUGAAUGGGUGGCAGGAGGG-----GC
(((------------.(((((((.....-------...........((((((((.....)))))))).............(((((..........))))).))))))).)-----)) ( -32.60)
>DroSim_CAF1 83905 93 - 1
GUC------------GCUCCUGCGGGGG-------AAAGCAAAAAGUUGUGGCCAAAGUGGUUACAAAUCAAAUCAAAAGACCCGGCAAGAUGAAUGGGUGGCAGGAGGG-----GC
(((------------.(((((((.....-------...........((((((((.....)))))))).............(((((..........))))).))))))).)-----)) ( -32.60)
>DroEre_CAF1 86998 92 - 1
GUC------------GCUCCAGCGGGGG-------GA-GGAAAAAGUUGUGGCCAAAGUGGUUACAAAUCAAAUCAAAAGACCCGGCAAGAUGAAUGGGUGGAAGGAGGG-----GC
(((------------.((((.((.(((.-------..-.((.....((((((((.....))))))))......))......))).))...((......))....)))).)-----)) ( -27.40)
>DroYak_CAF1 88215 105 - 1
GUCGGUCGGUCGGUUGCUCCUGCGGGGC-------GAAGCAAAAAGUUGUGGCCAAAGUGGUUACAAAUCAAAUCAAAAGACCCGGCAAGAUGAAUGGGUGAAGGGAGGG-----GC
(((((((.((...(((((((...)))))-------)).))......((((((((.....))))))))............)).))))).......................-----.. ( -27.20)
>DroAna_CAF1 82154 117 - 1
GUCGGCCGAGGAGGCGGAGCUGCGGGCCGGGGCCUGGAGUAAAAAGUUGUGGCCAAAGUGGUUACAAAUCAAAUCAAAAGACCCAGGCAGAUGAGUGGUGGGCAGCGGGGAAAGGAC
.((.(((.....))).))(((((..((((..((((((.((......((((((((.....)))))))).............)))))))).......))))..)))))........... ( -41.31)
>consensus
GUC____________GCUCCUGCGGGGG_______AAAGCAAAAAGUUGUGGCCAAAGUGGUUACAAAUCAAAUCAAAAGACCCGGCAAGAUGAAUGGGUGGCAGGAGGG_____GC
................(((((((.......................((((((((.....)))))))).............(((((..........))))).)))))))......... (-21.79 = -22.77 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:34 2006