| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,908,111 – 19,908,231 |
| Length | 120 |
| Max. P | 0.585548 |
| Location | 19,908,111 – 19,908,231 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.67 |
| Mean single sequence MFE | -30.87 |
| Consensus MFE | -25.73 |
| Energy contribution | -26.40 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19908111 120 + 22407834 CUUGGCCGUGAAUUCAGGAUCACUCUGUGCAUGUUCUGCUUCCAAAUAUCCAAGAAGUGCCAGCAGGAAGCUACAAAUUUAACGAAUGUAGAUUUGUCUAUCUAUCUUUAAGCGGAUAAA ..((..(.((....)).)..)).(((((...(((...((((((.....((...)).((....)).)))))).)))........(((.((((((......)))))).)))..))))).... ( -21.90) >DroSec_CAF1 84559 120 + 1 CCUGGAUGUGAAUUCAGGAUCACGCUGUGCAUGUCCUGCUCCUAAGUAUCCAAGAAGCACCAGCAGGAAACUGCAAAUUUAUCGAAUGUAAAUUUGUUUAUUUAUAUUUGAUCGGAGAAA ...(((((((....(((.......)))..)))))))..((((....................((((....))))......(((((((((((((......))))))))))))).))))... ( -35.30) >DroSim_CAF1 95760 120 + 1 CUUGGAUGAGAAUUCAGGAUCACGCUGUGCAUGUCCUGCUUCCAAACAUCCAAGAAGCACCAGCAGGAAACUGCAAUUUUAUCGAAUGUAGAUUUGUCUAUCUAUCUUUAAUCGGAGAAC ((((((((.(((..(((((.((.((...)).))))))).)))....)))))))).....((.((((....)))).........(((.((((((......)))))).)))....))..... ( -35.40) >consensus CUUGGAUGUGAAUUCAGGAUCACGCUGUGCAUGUCCUGCUUCCAAAUAUCCAAGAAGCACCAGCAGGAAACUGCAAAUUUAUCGAAUGUAGAUUUGUCUAUCUAUCUUUAAUCGGAGAAA (((((((((.....(((((((((...)))...)))))).......))))))))).....((.((((....)))).........(((.((((((......)))))).)))....))..... (-25.73 = -26.40 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:36 2006