Locus 71

Sequence ID 2L_DroMel_CAF1
Location 254,902 – 255,000
Length 98
Max. P 0.690041
window111

overview

Window 1

Location 254,902 – 255,000
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 86.01
Mean single sequence MFE -26.48
Consensus MFE -17.94
Energy contribution -18.74
Covariance contribution 0.80
Combinations/Pair 1.21
Mean z-score -2.04
Structure conservation index 0.68
SVM decision value 0.33
SVM RNA-class probability 0.690041
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 254902 98 - 22407834
AAACCCGGUGUAGUCGUUGAAGAAAUUUAAUUGGAGCAAACUCGAGCAAGCACUAGACAUUAGACGUUGCAAUUGCAGUUGCAGAUGCAACAAAAGUG
.......((.(((((((((((....))))))..(((....)))......).)))).)).......((((((.((((....)))).))))))....... ( -23.70)
>DroSec_CAF1 46651 98 - 1
AAACCCGGUGCAGUCGUGGAAGAAAUUUAAUUGGAGCAAACUCGAACAAGCACUAGACGUUAGACGUUGCAAUUGCAGUGGCAGAUGCAACAAAAGUG
....(..((((.......(((....)))..((.(((....))).))...))))..).........((((((.((((....)))).))))))....... ( -23.30)
>DroSim_CAF1 48309 98 - 1
AAACCCGGUGCAGUCGUUGAAGAAAUUUAAUUGGAGCAAACUCGAACAAGCACUAGACGUUAGACGUUGCAAUUGCAGUGGCAGAUGCAACAGAAGUG
....(..((((....((((((....))))))..(((....)))......))))..).........((((((.((((....)))).))))))....... ( -25.40)
>DroEre_CAF1 48703 91 - 1
AAACCCGCUGGAGUCGUUGAAGAAAUUUAAUUGGAGCAAGCGCGAACAACCACUGGGCGUUG-------CAAUUGCAGUUGCAGAUGCAAUAAAAGUG
...((((.(((....((((((....))))))((..((....))...)).))).)))).((((-------((.((((....)))).))))))....... ( -25.30)
>DroYak_CAF1 50175 97 - 1
AAAGCCGCUGGAGUCGUUGAAGAAAUUUAAUUGGAGCAAACGCAAGCAGUCAGCAGGCGUUGCAU-UUGCAAUUGCAGUUGCAGAUGCAAUGAAAGUG
...((((((((..((((((((....))))).)))..)...(....)....)))).)))(((((((-(((((((....))))))))))))))....... ( -34.70)
>consensus
AAACCCGGUGCAGUCGUUGAAGAAAUUUAAUUGGAGCAAACUCGAACAAGCACUAGACGUUAGACGUUGCAAUUGCAGUUGCAGAUGCAACAAAAGUG
......(((((....((((((....))))))..(((....)))......)))))...........((((((.((((....)))).))))))....... (-17.94 = -18.74 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:02 2006