Locus 7071

Sequence ID 2L_DroMel_CAF1
Location 19,802,080 – 19,802,192
Length 112
Max. P 0.604358
window11275

overview

Window 5

Location 19,802,080 – 19,802,192
Length 112
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 97.02
Mean single sequence MFE -24.34
Consensus MFE -21.35
Energy contribution -21.47
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.98
Structure conservation index 0.88
SVM decision value 0.14
SVM RNA-class probability 0.604358
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19802080 112 + 22407834
UUCCGAAUUUUAUAACCCUACUUAUAAUGAAUUUGUGGCAACUUCACGCGGCAGUCAACAAGUUUUCUUCAAGCCAACUUUUAUGGGGUUAUAGAAAUCGAAAGCAUAACAU
...(((.(((((((((((((.......(((...(((.((........)).))).)))..(((((..(.....)..)))))...))))))))))))).)))............ ( -26.70)
>DroSec_CAF1 68691 112 + 1
UCCCAAAUUUUAUACCCCUACUUAUAAUGAAUUUGUGGCAACCUCACGCGGCAGUCAACAAGUUUUCUUCAAGCCAACUUUUAUGGGGUUAUAGAAAUCGAAAGCAUAACAU
.......(((((((((((..........(((((((((((..((......))..))).)))))))).....(((....)))....)))).)))))))..(....)........ ( -20.20)
>DroSim_CAF1 69890 112 + 1
UUCCGAAUUUUAUACCCCUACUUAUAAUGAAUUUGUGGCAACCUCACGCGGCAGUCAACAAGUUUUCUUUAAGCCAACUUUUAUGGGGUUAUAGAAAUCGAAAGCAUAACAU
...(((.(((((((((((..((((....(((((((((((..((......))..))).))))))))....))))...........)))).))))))).)))............ ( -26.12)
>consensus
UUCCGAAUUUUAUACCCCUACUUAUAAUGAAUUUGUGGCAACCUCACGCGGCAGUCAACAAGUUUUCUUCAAGCCAACUUUUAUGGGGUUAUAGAAAUCGAAAGCAUAACAU
...(((.(((((((.((((((((.....(((((((((((..((......))..))).)))))))).....)))..........))))).))))))).)))............ (-21.35 = -21.47 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:35 2006