Locus 7068

Sequence ID	2L_DroMel_CAF1
Location	19,797,150 – 19,797,265
Length	115
Max. P	0.546408

overview

Window 9

Location	19,797,150 – 19,797,265
Length	115
Sequences	6
Columns	118
Reading direction	forward
Mean pairwise identity	84.21
Mean single sequence MFE	-32.54
Consensus MFE	-22.79
Energy contribution	-23.23
Covariance contribution	0.45
Combinations/Pair	1.14
Mean z-score	-1.89
Structure conservation index	0.70
SVM decision value	-0.07
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19797150 115 + 22407834
ACCCCUCC---GCUCGCAGCUUCCUUCUCUCGACUGAGCAAGAGUUUGGCUACAUUUGCCAUAUUUUUUGGGUUGCCUAGCAGUUUAUCUGCUUGUUGACAGCUGCCCAAAGGGAAUU
..((((..---....((((((.((..(((......))).((((((.((((.......)))).)))))).))(((..(.(((((.....))))).)..)))))))))....)))).... ( -34.60)
>DroSec_CAF1 63686 104 + 1
ACCCCUCC---GC-----------UUCUCUCCGCUGAGCAAGAGUUUGGCUACUUUUGCCAUAUUUUUUGGGUUGCCUAGCAGUUUAUCUGCUUGUUGACAGCUGCCCAAAGGGAAUU
..(((((.---((-----------........)).))((((((((......)))))))).......(((((((.((..(((((.....)))))((....)))).)))))))))).... ( -31.50)
>DroSim_CAF1 64932 104 + 1
ACCCCUCC---GC-----------UUCUCUCCGCUGAGCAAGAGUUUGGCUACUUUUGCCAUAUUUUUUGGGUUGCCUAGCAGUUUAUCUGCUUGUUGACAGCUGCCCAAAGGGAAUU
..(((((.---((-----------........)).))((((((((......)))))))).......(((((((.((..(((((.....)))))((....)))).)))))))))).... ( -31.50)
>DroEre_CAF1 65022 115 + 1
ACCCCUCU---GCUCGCAGCUUCCUUCGCUCGGCUUAGCAAAAGUUUGGCUACAUUUGCCAUAUUUUUUGGGUUGCCUAGCAGUUUAUCUGCUUGUUGACAGCUGCCCAAAGGGAAUU
..((((.(---(...((((((.((...(((......)))((((((.((((.......)))).)))))).))(((..(.(((((.....))))).)..))))))))).)).)))).... ( -36.90)
>DroYak_CAF1 66019 115 + 1
ACCCCUCU---GCUCGUAGCUUCCUUCUCUCGGCUUAGCAAGAGUUUGGCUACAUUCGCCAUAUUUUUUGGGUUGCCUAGCAGUUUAUCUGCUUGUUGACAGCUGCCCAAAGGGAAUU
.(((((((---(((...((((..........)))).))).))))..((((.......)))).....(((((((.((..(((((.....)))))((....)))).)))))))))).... ( -34.40)
>DroAna_CAF1 63018 118 + 1
UCAUCUCAACGGCUGGGGGACCUUUCCACACGUUUUCGAAUGAGUUUUGUUACAUUUGGUGUAUUUUUUUGGUUGCCUAGGAGUUUAUCUGCUUGUUGACAGCUGCCCAAAGGGAAUU
.....(((((..(((((.((((.....((((.....((((((..........))))))))))........)))).)))))((((......)))))))))......(((...))).... ( -26.32)
>consensus
ACCCCUCC___GCUCG_AGCUUCCUUCUCUCGGCUGAGCAAGAGUUUGGCUACAUUUGCCAUAUUUUUUGGGUUGCCUAGCAGUUUAUCUGCUUGUUGACAGCUGCCCAAAGGGAAUU
..((((..................................(((((.((((.......)))).)))))((((((.((..(((((.....)))))((....)))).)))))))))).... (-22.79 = -23.23 +   0.45)

alignment

secondary structure

dotplot

Window 0

Location	19,797,150 – 19,797,265
Length	115
Sequences	6
Columns	118
Reading direction	reverse
Mean pairwise identity	84.21
Mean single sequence MFE	-33.10
Consensus MFE	-21.68
Energy contribution	-22.93
Covariance contribution	1.25
Combinations/Pair	1.07
Mean z-score	-2.48
Structure conservation index	0.66
SVM decision value	0.03
SVM RNA-class probability	0.546408
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19797150 115 - 22407834
AAUUCCCUUUGGGCAGCUGUCAACAAGCAGAUAAACUGCUAGGCAACCCAAAAAAUAUGGCAAAUGUAGCCAAACUCUUGCUCAGUCGAGAGAAGGAAGCUGCGAGC---GGAGGGGU
...((((((((.(((((((((....(((((.....))))).)))...((........((((.......))))..((((((......))))))..)).))))))...)---))))))). ( -39.90)
>DroSec_CAF1 63686 104 - 1
AAUUCCCUUUGGGCAGCUGUCAACAAGCAGAUAAACUGCUAGGCAACCCAAAAAAUAUGGCAAAAGUAGCCAAACUCUUGCUCAGCGGAGAGAA-----------GC---GGAGGGGU
...(((((((((((.(((((((...(((((.....))))).(....)..........))))...))).)))...(((((((...)).)))))..-----------.)---))))))). ( -31.70)
>DroSim_CAF1 64932 104 - 1
AAUUCCCUUUGGGCAGCUGUCAACAAGCAGAUAAACUGCUAGGCAACCCAAAAAAUAUGGCAAAAGUAGCCAAACUCUUGCUCAGCGGAGAGAA-----------GC---GGAGGGGU
...(((((((((((.(((((((...(((((.....))))).(....)..........))))...))).)))...(((((((...)).)))))..-----------.)---))))))). ( -31.70)
>DroEre_CAF1 65022 115 - 1
AAUUCCCUUUGGGCAGCUGUCAACAAGCAGAUAAACUGCUAGGCAACCCAAAAAAUAUGGCAAAUGUAGCCAAACUUUUGCUAAGCCGAGCGAAGGAAGCUGCGAGC---AGAGGGGU
...((((((((.(((((((((....(((((.....))))).))).............((((.......))))..((((((((......)))))))).))))))...)---))))))). ( -40.90)
>DroYak_CAF1 66019 115 - 1
AAUUCCCUUUGGGCAGCUGUCAACAAGCAGAUAAACUGCUAGGCAACCCAAAAAAUAUGGCGAAUGUAGCCAAACUCUUGCUAAGCCGAGAGAAGGAAGCUACGAGC---AGAGGGGU
...(((((((((((((.((((........))))..))))).(((..((.........((((.......))))..((((((......))))))..))..))).....)---))))))). ( -36.40)
>DroAna_CAF1 63018 118 - 1
AAUUCCCUUUGGGCAGCUGUCAACAAGCAGAUAAACUCCUAGGCAACCAAAAAAAUACACCAAAUGUAACAAAACUCAUUCGAAAACGUGUGGAAAGGUCCCCCAGCCGUUGAGAUGA
......(((..(((.(((.......))).............((..(((.......((((.....)))).......((((.((....)).))))...)))..))..)))...))).... ( -18.00)
>consensus
AAUUCCCUUUGGGCAGCUGUCAACAAGCAGAUAAACUGCUAGGCAACCCAAAAAAUAUGGCAAAUGUAGCCAAACUCUUGCUAAGCCGAGAGAAGGAAGCU_CGAGC___GGAGGGGU
...((((((((((..(((.......(((((.....))))).)))..)))).......((((.......))))..(((((........)))))...................)))))). (-21.68 = -22.93 +   1.25)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:30 2006