Locus 7067

Sequence ID 2L_DroMel_CAF1
Location 19,795,563 – 19,795,669
Length 106
Max. P 0.980642
window11268

overview

Window 8

Location 19,795,563 – 19,795,669
Length 106
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 80.22
Mean single sequence MFE -22.03
Consensus MFE -12.24
Energy contribution -12.44
Covariance contribution 0.20
Combinations/Pair 1.12
Mean z-score -2.74
Structure conservation index 0.56
SVM decision value 1.87
SVM RNA-class probability 0.980642
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19795563 106 + 22407834
CCAGGACGCACUUUCCACUUUCCACAUUC--CACUUUCACCCUGCCAUUCUGCCAUCCUGCCAUCCUGACAUCCUGCCACUUUUCGUGGAAAGGGGGCCAACCCCCUU
.(((((.(((...................--...........................)))..)))))........((((.....)))).(((((((....))))))) ( -22.05)
>DroSec_CAF1 62076 98 + 1
CCAGGACGCACUUUCCACUCUCCACAUUC--CACUUUCACCCUGCCAUUCUGCC--------AUCCUGACAUCCUGCCACUUUUCGUGGAAAGGGGGCCAACCCCCUU
.(((((.(((...................--...................))).--------.)))))........((((.....)))).(((((((....))))))) ( -22.26)
>DroSim_CAF1 63350 98 + 1
CCAGGACGCACUUUCCACUCUCCACAUUC--CACUUUCACCCUGCCAUUCUGCC--------AUCCUGACAUCCUGCCACUUUUCGUGGAAAGGGGGCCAACCCCCUU
.(((((.(((...................--...................))).--------.)))))........((((.....)))).(((((((....))))))) ( -22.26)
>DroEre_CAF1 63489 82 + 1
CCAGGACGCACUUUCCACUUUC---------CACUUUCACCC--------UGCC--------AUCCUGACAUCCUGCCACUUUUGCUGGAAAGGGGGCCA-ACCCCCU
.(((((.(((............---------...........--------))).--------.)))))...(((.((.......)).))).((((((...-.)))))) ( -21.40)
>DroYak_CAF1 64509 91 + 1
CCAGGACGCACUUUCCACUUUCACCCUGCCAUACUGCCGUCC--------UGCC--------AUCCUGACAUCCUGGCACUUUUGCCGGAAAGGAGCCAA-CCCCCUU
.(((((((((........................)).)))))--------))..--------.((((....(((.((((....))))))).)))).....-....... ( -22.16)
>consensus
CCAGGACGCACUUUCCACUUUCCACAUUC__CACUUUCACCCUGCCAUUCUGCC________AUCCUGACAUCCUGCCACUUUUCGUGGAAAGGGGGCCAACCCCCUU
.(((((.........................................................)))))...(((.((........)))))((((((......)))))) (-12.24 = -12.44 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:28 2006