Locus 7061

Sequence ID 2L_DroMel_CAF1
Location 19,774,288 – 19,774,389
Length 101
Max. P 0.689556
window11261

overview

Window 1

Location 19,774,288 – 19,774,389
Length 101
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 87.97
Mean single sequence MFE -33.05
Consensus MFE -29.12
Energy contribution -28.48
Covariance contribution -0.63
Combinations/Pair 1.34
Mean z-score -1.54
Structure conservation index 0.88
SVM decision value 0.33
SVM RNA-class probability 0.689556
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19774288 101 + 22407834
UGUUCAAGCUGCAGCAGUUGCUGCGUCAUCUCUGCUGCCUUGUAAGCACCUCCAUCGUGCU---GCUCCUCCUCGGCAAUCUGUUUCAGGCUUGAACGCUCAUG
.((((((((((((((....)))))........(((((.......(((((.......)))))---.........)))))..........)))))))))....... ( -33.19)
>DroSec_CAF1 40936 101 + 1
UGUUCCAGCUGCAGCAGUUGCUGCGUCAUCUCUGCUGCCUUGUAGGCACCCCCAUCGUGCU---GCUCCUCCUCGGCAAUCUGUUUCAGGCUGGAGCGCUCAUG
.(((((((((..(((((((((((.(......((((......))))((((.......)))).---.......).)))))).)))))...)))))))))....... ( -37.00)
>DroSim_CAF1 42373 101 + 1
UGUUCCAGUUGCAGCAGUUGCUGCGUCAUUUCUGCUGCCUUGUAGGCACCCCCAUCGUGCU---GCUCCUCCUCGGCAAUCUGUUUCAGGCUGGAGCGCUCAUG
.(((((((((..(((((((((((.(......((((......))))((((.......)))).---.......).)))))).)))))...)))))))))....... ( -34.50)
>DroEre_CAF1 42254 101 + 1
UGUUCCAGCUGCAACAGCUGCUGCGUCAUCUCUGCUGCCUUAAAAGCACCCCCGUCGUGCU---GCUCCUCCUCGGCAAUCUGUUUCAGGCUGGAACGCUCAUG
.(((((((((..(((((.(((((((.((....)).)))......(((((.......)))))---..........))))..)))))...)))))))))....... ( -32.00)
>DroYak_CAF1 43784 101 + 1
GGUUCCAGCUGCAACAGCUGCUGCGUCAUCUCUGCUGCCUUGUGGGCACCCCCAUCGUGCU---GCUCUUCCUCGGCAAUCUGUUUCAGGCUGGAGCGCUCAUG
.(((((((((..(((((.(((((.(........((.((...(((((....)))))...)).---)).....).)))))..)))))...)))))))))....... ( -36.22)
>DroAna_CAF1 38983 104 + 1
UGCUCCAGUUGCAGAAGUUGCUGUGUCAUCUCCGCCGCCUUGUAGGCUUCUCCGUCCUGCUGAUGCUCCUCCUCGUCGAUCUGCUUCAGACUGGACCUCUCGUG
...((((((((((((....((.(((.......))).))...((((((......).)))))(((((........))))).)))))....)))))))......... ( -25.40)
>consensus
UGUUCCAGCUGCAGCAGUUGCUGCGUCAUCUCUGCUGCCUUGUAGGCACCCCCAUCGUGCU___GCUCCUCCUCGGCAAUCUGUUUCAGGCUGGAGCGCUCAUG
.(((((((((..(((((((((((((.......))).((......(((((.......)))))...))........))))).)))))...)))))))))....... (-29.12 = -28.48 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:22 2006