| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,728,947 – 19,729,038 |
| Length | 91 |
| Max. P | 0.639642 |
| Location | 19,728,947 – 19,729,038 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 76.74 |
| Mean single sequence MFE | -16.72 |
| Consensus MFE | -10.43 |
| Energy contribution | -10.85 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.639642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19728947 91 + 22407834 UGAUAGAUGGGAAAUUAAAGUUUCCCGGUGAGUAAAGUCUAACGAGCAUAUCUGCAAAGGGGAA-ACAG-AAAAUUGCAAUAAAUCAAUUAAC-- ((((...((((((((....))))))))....((((..(((.....(((....))).....(...-.)))-)...)))).....))))......-- ( -18.70) >DroSec_CAF1 292 92 + 1 CGAUAGAUGGGAAAUUAAAGUUUCCCGGUGAGUAAAGUCUAACGAGCAUAUCUGCAAAGGGGAAAACAG-AAAAUUUCAAUAAAUCAAUUAAC-- .(((..((..((((((....((((((...........((....))(((....)))....))))))....-..)))))).))..))).......-- ( -16.80) >DroSim_CAF1 274 91 + 1 CGAUAGAUGGGAAAUUAAAGUUUCCCGGUGAGUAAAGUCUAACGAGCAUAUCUGCAAAGGUGAA-AGAG-AAAAUUCCAAUAAAUCAAUUAAC-- .(((...((((((((....))))))))(.((((....((....))...(((((....)))))..-....-...))))).....))).......-- ( -15.20) >DroEre_CAF1 1272 83 + 1 CGAUAGGUGGGAAAUUAAAGUUUCCCGGUGAGUAAAAUCUAAUGAGCAUAUCUGAAAGGA--AA-ACGGUAAGAUUUCAAU-------AAAUC-- .((((.(((((((((....)))))))(((.......)))......)).))))......((--((-.(.....).))))...-------.....-- ( -13.80) >DroWil_CAF1 295 86 + 1 CGAGAGAUGCGAAAUGAGAGUCUCGCGAUGAGUGAAAUCCAAGGAGCAGAUCUACAUAU--------AG-AUAUUCAAAAUAAGUGAACUAAUCU ........((((.((....)).))))(((.(((..........(((...(((((....)--------))-)).)))...........))).))). ( -14.00) >DroYak_CAF1 1269 87 + 1 CGAUAGAUGGGAAAUUAAAGUUUCCCGGUGAGUAAAGUCCAGCGAGCAAAUCUGCAAAGG--AA-ACAGUAAGAUUUUAUU---UCAAAUAAC-- .......((((((((....)))))))).(((((((((((..((..(((....)))...(.--..-.).))..))))))).)---)))......-- ( -21.80) >consensus CGAUAGAUGGGAAAUUAAAGUUUCCCGGUGAGUAAAGUCUAACGAGCAUAUCUGCAAAGG__AA_ACAG_AAAAUUUCAAUAAAUCAAUUAAC__ ...((((((((((((....))))))).((..((........))..))..)))))......................................... (-10.43 = -10.85 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:13 2006