Locus 7053

Sequence ID 2L_DroMel_CAF1
Location 19,725,327 – 19,725,422
Length 95
Max. P 0.707403
window11250

overview

Window 0

Location 19,725,327 – 19,725,422
Length 95
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 76.30
Mean single sequence MFE -27.74
Consensus MFE -17.71
Energy contribution -17.21
Covariance contribution -0.50
Combinations/Pair 1.25
Mean z-score -1.37
Structure conservation index 0.64
SVM decision value 0.37
SVM RNA-class probability 0.707403
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19725327 95 + 22407834
ACUUUUGGCGCAUGCUCUGGGAGCACAACUCCACCAUUGUGGUCAUGCUGACCAAGCUCAAGGAAAUGGGAAGGGUAAGC-----UC--------CCCCCUUGCA---CCA
.....(((.(((......((((((...((((..(((((.(((((.....)))))..........)))))...))))..))-----))--------))....))).---))) ( -32.40)
>DroVir_CAF1 16399 94 + 1
ACUUUUGGCGCAUGCUCUGGGAGCACAACUCCACCAUAGUUGUUAUGUUGACCAAACUCAAGGAAAUGGGCAGGGUAAGC-----UG--------A-CA--UAUUCU-CCU
....(..((...(((((((((((.....)))).((((..((.((..(((.....)))..)).)).)))).))))))).))-----..--------)-..--......-... ( -23.50)
>DroGri_CAF1 15296 106 + 1
ACUUUUGGCGCAUGCUCUGGGAGCACAACUCCACCAUAGUUGUUAUGCUAACCAAACUCAAGGAAAUGGGCAGGGUAAGU-----UUCACAGCUCAACACUCGCUCCCUUU
......(((....)))..((((((((((((.......))))))...(((.(((...((((......))))...))).)))-----.................))))))... ( -25.30)
>DroWil_CAF1 19588 97 + 1
ACUUUUGGCGCAUGCUCUGGGAACAUAAUUCCACCAUUGUAGUCAUGUUGACCAAACUAAAGGAAAUGGGCAGAGUAAGUGUAGU-----------CCACUUGUA---CAU
.......((((.(((((((((((.....)))).(((((........(((.....))).......))))).))))))).))))...-----------.........---... ( -23.56)
>DroMoj_CAF1 16406 96 + 1
ACUUCUGGCGCAUGCUCUGGGAGCACAACUCCACCAUAGUUGUUAUGUUAACCAAGCUCAAGGAAAUGGGCAGGGUAAGC-----UG--------AACA--UGCUGUAUAU
.......(((((((.((..((((.....))))..............(((.(((..(((((......)))))..))).)))-----.)--------).))--))).)).... ( -25.10)
>DroAna_CAF1 14185 93 + 1
ACUUUUGGCGAAUGCUCUGGGAGCAUAACUCCACCAUUGUGGUGAUGCUCACCAAGCUCAAGGAAAUGGGCAGGGUAUGU-----GC--------UGAUC--AAA---AGA
.(((((((((.(((((((((((((((....((((....))))..)))))).))..(((((......)))))))))))).)-----))--------....)--)))---)). ( -36.60)
>consensus
ACUUUUGGCGCAUGCUCUGGGAGCACAACUCCACCAUAGUUGUUAUGCUGACCAAACUCAAGGAAAUGGGCAGGGUAAGC_____UC________AACAC_UGCA___CAU
.........((.(((((((((((.....)))).((((.........(((.....)))........)))).))))))).))............................... (-17.71 = -17.21 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:12 2006