Locus 7040

Sequence ID 2L_DroMel_CAF1
Location 19,685,264 – 19,685,358
Length 94
Max. P 0.985545
window11232

overview

Window 2

Location 19,685,264 – 19,685,358
Length 94
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 95.67
Mean single sequence MFE -34.60
Consensus MFE -32.40
Energy contribution -32.40
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -3.75
Structure conservation index 0.94
SVM decision value 2.01
SVM RNA-class probability 0.985545
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19685264 94 + 22407834
GGACAUUCGGGACUGCAGGACAUUGGGACACAAUGUGUGGAU------GUGCAGUUGUGGAUGUGUGCGAUGAUGAUGAUGAUGACGGCAACGUCAAAUG
..(((((((.((((((((.((((((.....)))))).)....------.))))))).)))))))..................(((((....))))).... ( -33.40)
>DroSec_CAF1 107060 100 + 1
GGACAUUCGGGACUGCAGGACAUUGGGACACAAUGUGUGGAUGGGCAUGUGCAGUUGUGGAUGUGUGCGAUGAUGAUGAUGAUGACGGCAACGUCAAAUG
..(((((((.(((((((..((((((.....))))))(((......))).))))))).)))))))..................(((((....))))).... ( -34.40)
>DroSim_CAF1 86353 100 + 1
GGACAUUCGGGACUGCAGGACAUUGGGACACAAUGUGUGGAUGUGCAUGUGCAGUUGUGGAUGUGUGCGAUGAUGAUGAUGAUGACGGCAACGUCAAAUG
..(((((((.((((((((.(((((.(.((.....)).).))))).)...))))))).)))))))..................(((((....))))).... ( -36.00)
>consensus
GGACAUUCGGGACUGCAGGACAUUGGGACACAAUGUGUGGAUG_GCAUGUGCAGUUGUGGAUGUGUGCGAUGAUGAUGAUGAUGACGGCAACGUCAAAUG
..(((((((.((((((((.((((((.....)))))).)...........))))))).)))))))..................(((((....))))).... (-32.40 = -32.40 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:56 2006