Locus 704

Sequence ID 2L_DroMel_CAF1
Location 2,031,698 – 2,031,803
Length 105
Max. P 0.988423
window1152

overview

Window 2

Location 2,031,698 – 2,031,803
Length 105
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 90.54
Mean single sequence MFE -33.54
Consensus MFE -30.10
Energy contribution -29.86
Covariance contribution -0.24
Combinations/Pair 1.05
Mean z-score -1.87
Structure conservation index 0.90
SVM decision value 2.12
SVM RNA-class probability 0.988423
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2031698 105 + 22407834
UGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACGUUUUUUUUUUUUACAAUUAACUAAAUACCUAA----CAACAA
(((((.(((.(((((((((((((((((...))))))((((.(((.......))))))))).)))...........)))))).)))))))).........----...... ( -31.50)
>DroSec_CAF1 49016 107 + 1
UGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACGUUUUU--UUUUCACAAUUAUCUAAAUACCUAACUAACUACAA
(((((.(((((((...(((((((((((...))))))((((.(((.......))))))))).)))..((....--.....))...........))))..))))))))... ( -32.30)
>DroSim_CAF1 47619 107 + 1
UGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACGUUUUU--UUUUCACAAUUAACUAAAUACCUAACUAACUACAU
(((((.(((((((...(((((((((((...))))))((((.(((.......))))))))).)))..(((..(--(......))..)))....))))..))))))))... ( -33.80)
>DroEre_CAF1 47807 107 + 1
UGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACGUUUUU--UUUUGACGCUUGACUAAAUACUUAACUAAGUAUAA
(((((.((((.((((((((((((((((...))))))((((.(((.......))))))))).)))........--))))).)))).))))).((((((....)))))).. ( -37.50)
>DroYak_CAF1 51059 99 + 1
UGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACGUUUUU--UUUU--------ACUAAAUACUUAACUGUCUACAA
.((((.(((((((((((((((((((((...))))))((((.(((.......))))))))).)))........--))))--------)))....))).))))........ ( -32.60)
>consensus
UGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACGUUUUU__UUUUCACAAUUAACUAAAUACCUAACUAACUACAA
.(((...(((((((.........)))))))(((..(((((.(((.......)))))))).)))..............................)))............. (-30.10 = -29.86 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:22 2006