Locus 7031

Sequence ID 2L_DroMel_CAF1
Location 19,628,443 – 19,628,539
Length 96
Max. P 0.877944
window11216 window11217

overview

Window 6

Location 19,628,443 – 19,628,539
Length 96
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.30
Mean single sequence MFE -20.50
Consensus MFE -14.36
Energy contribution -15.25
Covariance contribution 0.89
Combinations/Pair 1.11
Mean z-score -2.31
Structure conservation index 0.70
SVM decision value 0.90
SVM RNA-class probability 0.877944
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19628443 96 + 22407834
CUUUACUUGUGAAUUACUCACACAUGAAU---GAAAUGUUGGCAUAUCAAUUUUUAUGCCACACGCA----UACGUAUUAUUUUAGCAUUUACAUAC------------GAG--UGA---
..((((((((((.....))))....(.((---((((((((((((((........))))))..(((..----..)))........))))))).))).)------------)))--)))--- ( -22.10)
>DroPse_CAF1 68152 110 + 1
UUUUACUUGCGAAUUACUCACACAUGAAA---GAAAUGUUGGCAUAUCAAUUUUUAUGCCAUACGCA----UAUGUAUUAUUUCUGCAUUUACAUACUCAUACCCCUACGAAUAUGA---
...(((.((((..........((((....---...))))(((((((........)))))))..))))----...)))...............((((.((..........)).)))).--- ( -18.40)
>DroGri_CAF1 63479 97 + 1
UUUUACUUGUGAAUUACUCACACAUGAAA-----AACGUUGGCAUAUCAAUUUUUAUGCCAUACGCA----CACGUAUUAUUUUAGCAUUUACAUAU------------GCG--GGCACC
(((((..(((((.....)))))..)))))-----...(((((((((........))))))).))((.----..(((((.................))------------)))--.))... ( -21.63)
>DroWil_CAF1 76442 103 + 1
UUUUACUUGUGAAUUACUCACACAUGAAAAAAAAAAUGUUGGCAUAUCAAUUUUUAUGCCAUACGCACAUGUAUGUAUUAUUUUAGCAUUUACAUAU------------GAC--UUU---
(((((..(((((.....)))))..)))))........(((((((((........))))))).))......(((((((.............)))))))------------...--...--- ( -19.82)
>DroMoj_CAF1 78859 95 + 1
AUUUACUUGUGAAUUACUCACACAUGAAA----AAGCGUUGGCAUAUCAAUUUUUAUGCCAUACGCA----CAUGUAUUAUUUUGGCAUUUACAUAU------------GAG--GGC---
.((((..(((((.....)))))..)))).----..(((((((((((........))))))).)))).----.(((((.............)))))..------------...--...--- ( -22.62)
>DroPer_CAF1 71002 110 + 1
UUUUACUUGCGAAUUACUCACACAUGAAA---GAAAUGUUGGCAUAUCAAUUUUUAUGCCAUACGCA----UAUGUAUUAUUUCUGCAUUUACAUACUCAUACCCCUACGAAUAUGA---
...(((.((((..........((((....---...))))(((((((........)))))))..))))----...)))...............((((.((..........)).)))).--- ( -18.40)
>consensus
UUUUACUUGUGAAUUACUCACACAUGAAA___GAAAUGUUGGCAUAUCAAUUUUUAUGCCAUACGCA____UAUGUAUUAUUUUAGCAUUUACAUAC____________GAG__UGA___
.((((..(((((.....)))))..)))).....(((((((((((((........))))))(((((........)))))......)))))))............................. (-14.36 = -15.25 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 19,628,443 – 19,628,539
Length 96
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.30
Mean single sequence MFE -23.14
Consensus MFE -15.78
Energy contribution -15.12
Covariance contribution -0.66
Combinations/Pair 1.12
Mean z-score -2.24
Structure conservation index 0.68
SVM decision value 0.80
SVM RNA-class probability 0.854910
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19628443 96 - 22407834
---UCA--CUC------------GUAUGUAAAUGCUAAAAUAAUACGUA----UGCGUGUGGCAUAAAAAUUGAUAUGCCAACAUUUC---AUUCAUGUGUGAGUAAUUCACAAGUAAAG
---.((--(.(------------(((((((.............))))))----)).)))(((((((........))))))).......---.......((((((...))))))....... ( -21.12)
>DroPse_CAF1 68152 110 - 1
---UCAUAUUCGUAGGGGUAUGAGUAUGUAAAUGCAGAAAUAAUACAUA----UGCGUAUGGCAUAAAAAUUGAUAUGCCAACAUUUC---UUUCAUGUGUGAGUAAUUCGCAAGUAAAA
---.((((((((((....))))))))))....(((.(((.((.((((((----((.((.(((((((........))))))))).....---...))))))))..)).))))))....... ( -25.60)
>DroGri_CAF1 63479 97 - 1
GGUGCC--CGC------------AUAUGUAAAUGCUAAAAUAAUACGUG----UGCGUAUGGCAUAAAAAUUGAUAUGCCAACGUU-----UUUCAUGUGUGAGUAAUUCACAAGUAAAA
..(((.--(((------------(((((.(((((........(((((..----..)))))((((((........))))))..))))-----)..)))))))).))).............. ( -25.90)
>DroWil_CAF1 76442 103 - 1
---AAA--GUC------------AUAUGUAAAUGCUAAAAUAAUACAUACAUGUGCGUAUGGCAUAAAAAUUGAUAUGCCAACAUUUUUUUUUUCAUGUGUGAGUAAUUCACAAGUAAAA
---...--(.(------------(((((((.................)))))))))((.(((((((........)))))))))...............((((((...))))))....... ( -18.93)
>DroMoj_CAF1 78859 95 - 1
---GCC--CUC------------AUAUGUAAAUGCCAAAAUAAUACAUG----UGCGUAUGGCAUAAAAAUUGAUAUGCCAACGCUU----UUUCAUGUGUGAGUAAUUCACAAGUAAAU
---...--...------------.........(((.........(((((----.((((.(((((((........)))))))))))..----...)))))(((((...)))))..)))... ( -21.70)
>DroPer_CAF1 71002 110 - 1
---UCAUAUUCGUAGGGGUAUGAGUAUGUAAAUGCAGAAAUAAUACAUA----UGCGUAUGGCAUAAAAAUUGAUAUGCCAACAUUUC---UUUCAUGUGUGAGUAAUUCGCAAGUAAAA
---.((((((((((....))))))))))....(((.(((.((.((((((----((.((.(((((((........))))))))).....---...))))))))..)).))))))....... ( -25.60)
>consensus
___UCA__CUC____________AUAUGUAAAUGCUAAAAUAAUACAUA____UGCGUAUGGCAUAAAAAUUGAUAUGCCAACAUUUC___UUUCAUGUGUGAGUAAUUCACAAGUAAAA
........................((((((.............))))))....(((((.(((((((........)))))))))...............((((((...)))))).)))... (-15.78 = -15.12 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:42 2006