| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,581,154 – 19,581,262 |
| Length | 108 |
| Max. P | 0.515248 |
| Location | 19,581,154 – 19,581,262 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 76.67 |
| Mean single sequence MFE | -41.98 |
| Consensus MFE | -22.86 |
| Energy contribution | -25.62 |
| Covariance contribution | 2.76 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.54 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.515248 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19581154 108 - 22407834 UACUGCUUGCGCUUGGGCAGGGGCACGUGCCAUUUCAUGUGCCUCUCCAGCUGGUAGUGUAGACGAAACUUCUUGGGGCAAUCCGGGCAUUGCAGCUGCUCGGUUGUG (((((((.((.....((.(((((((((((......))))))))))))).)).)))))))..................((((.(((((((.......))))))))))). ( -43.80) >DroPse_CAF1 907 108 - 1 AACACCUUGCGUUUGGGCAUCGGCAGAUGGCCCUGGCUGUGCCGUUCCAGCUGGUAGCGAGUGCGGAAUUUCUUCGGGCACUCCUGACACGCCAACAGAUUGGACUCG ....((...(....(((((((....))).))))((((.(((.((((((....)).)))((((((.(((....)))..))))))..).)))))))...)...))..... ( -32.70) >DroGri_CAF1 2215 105 - 1 UACAUCUUCCGCUUGGGCAUAGGCAGAUGCUGUUGCAUGUGCCGCUGCAGCUGGUAGCGGGAGCGAAACUGUUUCUCGCACUGCUCGCAGCACAGUAGCUUCAUG--- ..............((((...((((.((((....)))).))))((((((((.(((.(((((((((....)))))).))))))))).)))))......))))....--- ( -41.70) >DroSim_CAF1 2290 108 - 1 UACUGCUUCCGCUUGGGCAGGGGCACAUGCCAUUUCAUGUGCCUCUCCAGCUGGUAGUGUAGACGAAACUUCUUGGGGCAAUCCGGGCAUUGCAGCUGCUCGGUUGCA (((((((...(((..((.(((((((((((......)))))))))))))))).)))))))..................((((.(((((((.......))))))))))). ( -45.20) >DroEre_CAF1 2292 108 - 1 UACUGCUUCCGCUUGGGCAGGGGCACAUGCCAUUUCAUGUGCCUUUCCAGCUGGUAGUGUAGGCGAAACUUCUUGGGGCAAUCCGGGCAUUGCAGCUGCUCGGUUGGG ..((((((......))))))(((((((((......)))))))))..((((((((((((....((((.....((((((....))))))..)))).))))).))))))). ( -45.10) >DroYak_CAF1 2353 108 - 1 UACUGCUUCCGAUUGGGCAGGGGCACAUGCCAUUUCAUGUGCCUUUCAAGCUGGUAGUGCCGGCGAAACUUCUUGAGGCAAUCAGGGCAUUGCAGCUGCUCGGUUGAG .........((((((((((((((((((((......)))))))))))..(((((.(((((((...((....))((((.....))))))))))))))))))))))))).. ( -43.40) >consensus UACUGCUUCCGCUUGGGCAGGGGCACAUGCCAUUUCAUGUGCCUCUCCAGCUGGUAGUGUAGGCGAAACUUCUUGGGGCAAUCCGGGCAUUGCAGCUGCUCGGUUGCG ....((((.(((((.((((((((((((((......)))))))))))...))).).)))).))))..................(((((((.......)))))))..... (-22.86 = -25.62 + 2.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:30 2006