Locus 702

Sequence ID 2L_DroMel_CAF1
Location 2,021,107 – 2,021,212
Length 105
Max. P 0.558467
window1149

overview

Window 9

Location 2,021,107 – 2,021,212
Length 105
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 79.20
Mean single sequence MFE -42.87
Consensus MFE -27.54
Energy contribution -28.18
Covariance contribution 0.64
Combinations/Pair 1.23
Mean z-score -1.34
Structure conservation index 0.64
SVM decision value 0.05
SVM RNA-class probability 0.558467
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2021107 105 + 22407834
UGG-UUAGGGGCGGGUGGCAUGCCCCCGUGUGCGAGUGAGCGGCGAACAUCUGUUUGCCUUCAAAGUUGUGGCGUGCGGCUUGUGCGGGCUGCCCGAAUGCAAAGG
...-....((((((.(.(((((...(((..(((.(.((((.(((((((....)))))))))))......).)))..)))..))))).).))))))........... ( -42.90)
>DroSec_CAF1 38564 104 + 1
UGG-UUAGGGGCGGGUGGCAUGCC-CCGUGUGCGAGUGAGCGGCGAACAUCUGUUUGCCUUCAAAGUUGCGGCGUGCGGCUUGUGCGGGCUGCCCGCAUGCAAAGG
...-...((((((.......))))-))(((((((..((((.(((((((....))))))))))).....(((((.((((.....)))).))))).)))))))..... ( -47.50)
>DroSim_CAF1 37025 105 + 1
GGG-UUAGGGGCGGGUGGCAUGCCCCCGUGUGCGGGAGAGCGGCGAACAUCUGUUUGCCUUCAGAGUUGCGGCGUGCGGCUUGUGCGGGCUGCCCGCAUGCAAAGG
...-......((((((.(((((((((((....)))).(((.(((((((....))))))))))........))))))).))))(((((((...)))))))))..... ( -49.80)
>DroEre_CAF1 37152 86 + 1
UGGUUUGGGGGCGCG--------------------GUGAGCGGCGAACAUCUGUUUGCCUUCAAAGUUGUGCCGUGCGGCUUGUGCGGGCUGUCCGCAUGCAAAGA
..((.((((((((((--------------------.((((.(((((((....)))))))))))....))))))..(((((((....))))))))).)).))..... ( -33.80)
>DroYak_CAF1 40238 104 + 1
UGGCUUGGAGGCGGGGGGGACAC--CCAUUUGCGAGUGAGCGGCGAACAUCUGUUUGCCUUCAAAGUUGCGCCGUGCGGCUUGUGCGGGCUGCCCGCAUGCAAAGG
..(((((.(((.((((....).)--)).))).)))))(((.(((((((....))))))))))....(((((((....)))..(((((((...)))))))))))... ( -45.70)
>DroPer_CAF1 47353 97 + 1
AGG-A---CGGCGGGUUGGGAGC-----AUUGCAAGUGAGAGGCAAACAUCUGUUUGCCUUCAAAGUUGCCUCGUGUGGCUUAUGCGGGCUACCAGCAUCCCACAC
...-.---.((.(((((((.(((-----.(((((..(((.((((((((....)))))))))))((((..(.....)..)))).)))))))).))))).)))).... ( -37.50)
>consensus
UGG_UUAGGGGCGGGUGGCAUGC__CCGUGUGCGAGUGAGCGGCGAACAUCUGUUUGCCUUCAAAGUUGCGGCGUGCGGCUUGUGCGGGCUGCCCGCAUGCAAAGG
..........((((((((..................((((.(((((((....)))))))))))(((((((.....))))))).......))))))))......... (-27.54 = -28.18 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:18 2006