| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,527,463 – 19,527,583 |
| Length | 120 |
| Max. P | 0.704341 |
| Location | 19,527,463 – 19,527,583 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.39 |
| Mean single sequence MFE | -45.48 |
| Consensus MFE | -26.02 |
| Energy contribution | -25.44 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19527463 120 + 22407834 ACUGGCAAUGAGUCGGCUGCAGAUGCUGGAGCAGCUGGUCAACACUCAGGGCAUUAGCACGGACAAGCAUAGUGGACUCACCUGCAGGGCAUUGUCCGAGUGCGGCUGCUCCGGCAUCCA .(((((.....))))).....((((((((((((((((.....(((((...((....))..((((((((...(..(......)..)...)).))))))))))))))))))))))))))).. ( -57.50) >DroVir_CAF1 2128 120 + 1 UUUGGCCAUGAGCCGAUUGCAAAUGCUGGAACAGUUGGUGCAUACACAAGGCAUAAGCUCUGAUAAACAUAGCGGAUUAACCUGCCGUGCUCUGUCCGACUGCGGCUGUUCCGGCAUACA .(((((.....)))))......(((((((((((((((((((.........)))).((.((.((((..((..((((......))))..))...)))).)))).)))))))))))))))... ( -42.90) >DroGri_CAF1 4974 120 + 1 GCUGGCGAUGAGUCGUCUGCAGAUGCUGGAGCAGCUGGUGCACACGCAGGGCAUUAGCACCGAUAAGCACAGUGGGCUGACGUGUCGAGCACUGUCCGAUUGCGGCUGCUCGGGCAUCCA ((.(((((....))))).)).((((((.(((((((((((((....((...))....))))).....(((...(((((....(((.....))).)))))..))))))))))).)))))).. ( -55.00) >DroWil_CAF1 5079 120 + 1 UCUGGCCAUGAGCCGUUUGCAGAUGUUAGAGCAGCUAGUCAAUACUCAAGGUAUCAGCACCGAUAAGCACAGUGGUCUUACAUGUCGGGCUCUGUCAGAAUGCGGCUGUUCGGGCAUUCA ....(((.(((((.(((.(((..((.((((((.....((..((((.....))))..)).((((((((.((....))))....)))))))))))).))...)))))).))))))))..... ( -36.60) >DroMoj_CAF1 1849 120 + 1 UCUAGCCAUGAGCCGGCUACAAAUGCUCGAGCAAUUGGUGAACACCCAAGGAAUUAGCACUGACAAGCAUAGCGGAUUGACAUGUCGGGCUCUGUCCGACUGCGGAUGCUCGGGCAUACA ..(((((.......)))))...(((((((((((.((((.......))))(((...(((.((((((.(((........)).).)))))))))...))).........)))))))))))... ( -43.50) >DroAna_CAF1 3841 120 + 1 GCUGGCCAUGAGUCGCCUACAAAUGCUAGAGCAGUUGGUUCAUACUCAAGGCAUCAGUACGGACAAGCACAGUGGACUGACAUGUCGAGCUCUAUCCGAGUGCGGCUGCUCGGGCAUCCA (((((((.(((((......(((.(((....))).)))......))))).)))..))))..(((...((..(((.(((......)))..)))....((((((......)))))))).))). ( -37.40) >consensus UCUGGCCAUGAGCCGGCUGCAAAUGCUGGAGCAGCUGGUGAACACUCAAGGCAUUAGCACCGACAAGCACAGUGGACUGACAUGUCGGGCUCUGUCCGACUGCGGCUGCUCGGGCAUCCA ..((((.....)))).......(((((.((((((((..............((....))........(((...(((((................)))))..))))))))))).)))))... (-26.02 = -25.44 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:12 2006