| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,018,360 – 2,018,451 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 2,018,360 – 2,018,451 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 88.01 |
| Mean single sequence MFE | -28.63 |
| Consensus MFE | -22.70 |
| Energy contribution | -22.23 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.79 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2018360 91 + 22407834 --------GGCCUAAGUCUGGCC-GCAGUUAUAAACCGGGAAAUCGAAAUGGCAAAGUGCAGGCCAAAUGAUGCAACAUCUGCAGUGUUUGGCCAAUGAA --------((((.......))))-((((((((....(((....)))..)))))....))).((((((((..((((.....))))..))))))))...... ( -29.70) >DroSec_CAF1 35862 91 + 1 --------GGCCUAAGUCUGGCC-GCAGUUGUAGACCGGGAAAUCGAAAUGGCAAAGUGCAGGCCAAAUGAUGCAACAUCUGCAGUGUUUGGCCAAGGAA --------((((.......))))-(((.((((....(((....))).....))))..))).((((((((..((((.....))))..))))))))...... ( -33.10) >DroSim_CAF1 34312 91 + 1 --------GGCCUAAGUCUGGCC-GCAGUUAUAGACCGGGAAAUCGAAAUGGCAAAGUGCAGGCCAAAUGAUGCAACAUCUGCAGUGUUUGGCCAAGGAA --------((((.......))))-(((.((.((...(((....)))...))...)).))).((((((((..((((.....))))..))))))))...... ( -30.10) >DroEre_CAF1 33326 91 + 1 --------GGCCUAAGUCUGGCC-GCAGUUAUAGACCGGGAAAUCGAAAUGGCAAAGUGCAGGCUAAAUGAUGCAACAUCGGCAGUGUUUGGCCAAGGAA --------((((.......))))-(((.((.((...(((....)))...))...)).))).((((((((..(((.......)))..))))))))...... ( -26.30) >DroYak_CAF1 37553 91 + 1 --------GGCCUAAGUCUGGCC-GCAGUUAUAGACUCGGAAAUCGAAAUGGCAAAGUGCAGGCCCAAUGAUGCAACAUCUGCAGUGUUUGGCCAAGGAA --------((((.......))))-(((.((.((...(((.....)))..))...)).))).((((.(((..((((.....))))..))).))))...... ( -26.20) >DroAna_CAF1 33397 100 + 1 AUUGGUGGUGUUUAGGCCUGGCCAACAGUUAUAGAAAGGGAAAUUGAAAUGGCAAAGAGCUAGCCAAGUGAUGCAACAUCUGCAGUGCUUGGCUUUGGAA .((((((((......)))..)))))(((((...........)))))...((((.....))))(((((((..((((.....))))..)))))))....... ( -26.40) >consensus ________GGCCUAAGUCUGGCC_GCAGUUAUAGACCGGGAAAUCGAAAUGGCAAAGUGCAGGCCAAAUGAUGCAACAUCUGCAGUGUUUGGCCAAGGAA ........((((.......))))............................((.....)).((((((((..((((.....))))..))))))))...... (-22.70 = -22.23 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:14 2006