| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,405,502 – 19,405,599 |
| Length | 97 |
| Max. P | 0.618940 |
| Location | 19,405,502 – 19,405,599 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 83.02 |
| Mean single sequence MFE | -27.30 |
| Consensus MFE | -20.45 |
| Energy contribution | -21.07 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19405502 97 + 22407834 UCACAA---UCAAAUAAUUGAGUUAGCUGGUAUUUACAUACCUGGUCCAUCCGGACCCGUCAACUUCUCCGUCUUCGUUUCCCGAACGGUGAUGGUGACA ((((.(---(((.......(((((..(.(((((....))))).(((((....))))).)..)))))..((((..(((.....))))))))))).)))).. ( -27.80) >DroSec_CAF1 8433 96 + 1 CCACAA---UGAAAUAAUUGAGUUAGCUGGUAG-UACAUACCUGGUCCAUCUGGACCCGUCAACUUCUCCGUCUUCGUUUCCCGAACGGUGAUGGUGACA ...(((---(......))))((((..(.((((.-....)))).(((((....))))).)..))))((.(((((.((((((...)))))).))))).)).. ( -28.90) >DroSim_CAF1 8562 97 + 1 CCACAA---UUAAAUAAUUGAGUUAGCUGGUAGUUACAUACCUGGUCCAUCUGGACCCGUCAACUUCUCCGUCUUCGUUUCCCGAACGGUAAUGGUGACA ...(((---((....)))))((((..(.((((......)))).(((((....))))).)..))))((.((((..((((((...))))))..)))).)).. ( -26.40) >DroEre_CAF1 8171 93 + 1 ACGUAC---UAAAAGAUUUGAUUUAGCUGGCAGU----UACCUGGUCCAUCAGGACCCGUCAGCUUCUCCGUCUUCGUUUCCCGCACGGUGAUGGUGACA ......---...............(((((((((.----...))(((((....))))).)))))))((.(((((.((((.......)))).))))).)).. ( -27.40) >DroYak_CAF1 8354 93 + 1 CCGUAA---UAAAAUAUUUGAGUUAGCUGGUAGU----UACCUGGUCCAUCAGGACCCGUCAGCUUCUCUGUCUUCGUUUCCCGAACGGUGAUGGUGACA ......---..........(((..((((((..(.----..(((((....)))))..)..)))))).))).(((.(((((.((.....)).))))).))). ( -25.10) >DroAna_CAF1 8516 100 + 1 AAACACAUCUCAGAAGGCUAAGAUAUCUGAUGGGUAAGUACCUGGACCAUCGGGACCCGUCAACUUCUCCGUCUUGGUUUCACGCACCGUGAUGGUGACA ..((.((((.(..(((((..(((....((((((((.....((((......))))))))))))...)))..)))))(((.......)))).)))))).... ( -28.20) >consensus CCACAA___UAAAAUAAUUGAGUUAGCUGGUAGUUACAUACCUGGUCCAUCAGGACCCGUCAACUUCUCCGUCUUCGUUUCCCGAACGGUGAUGGUGACA ....................((((..(.((((......)))).(((((....))))).)..))))((.(((((.(((((.....))))).))))).)).. (-20.45 = -21.07 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:30 2006