| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,017,739 – 2,017,841 |
| Length | 102 |
| Max. P | 0.634757 |
| Location | 2,017,739 – 2,017,841 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 77.22 |
| Mean single sequence MFE | -30.90 |
| Consensus MFE | -22.34 |
| Energy contribution | -21.98 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.634757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2017739 102 - 22407834 GGACUGCGAAUGGCGCAUUGUGGUGGCCAUGGCAAUGGAGUUUAUUUCCGACUCGGGCGACCACAUGGUGAUCUCAC---U---UCCUUUUGCA---CUUAGCUAUCCAGU- (((..((....((.(((.((((((.(((.(((...(((((.....)))))..)))))).)))))).((((....)))---)---......))).---))..))..)))...- ( -35.00) >DroVir_CAF1 25127 100 - 1 GGACUGCGAGUGUCGCAUUGUGGUGGCCAUGGCAAUGGAAUUUAUCUCCGAUUCGGGCGACCACAUUGUAUUAUAUCUUGU---C---------UUGAUUUGCUUUGUUGUA .(((.(((((((..(((.((((((.(((.(((...((((.......))))..)))))).)))))).)))..)))(((....---.---------..)))))))...)))... ( -27.60) >DroEre_CAF1 32693 102 - 1 AGACUGCGAAUGGCGCAUUGUGGUGGCCAUGGCAAUGGAGUUUAUUUCCGACUCGGGCGACCACAUCGUGAUCUCAC---U---UCCUUUUGCA---CUUAGCGUUGCUGG- ((...(((...((.(((.((((((.(((.(((...(((((.....)))))..)))))).))))))..(((....)))---.---......))).---))...)))..))..- ( -31.70) >DroYak_CAF1 36909 102 - 1 GGACUGCGAAUGGCGCAUUGUGGUGGCCAUGGCAAUGGAGUUUAUUUCCGACUCGGGCGACCACAUGGUGAUCUCAC---U---UCCUUUUGCA---CUUUGCGUUCCAGU- (((.(((((..((.(((.((((((.(((.(((...(((((.....)))))..)))))).)))))).((((....)))---)---......))).---))))))).)))...- ( -36.40) >DroAna_CAF1 32678 102 - 1 UGACUGUGAAUGGCGCAUGGUGGUGGCCAUGGCAAUGGAAUUAAUUUCCGACUCUGGCGACCACAUUCUCAACUCAC---U---UCCUUUAGCA---CUUAAUGUUUAAAU- .....((((.(((......(((((.((((.((...(((((.....))))).)).)))).)))))....)))..))))---.---..........---..............- ( -24.80) >DroPer_CAF1 40732 105 - 1 GGACUGCGAAUGCCGCAUGGUGGUGGCCAUGGCAAUGGAAUUUAUUUCCGAUUCCGGCGACCACAUUCUGUUCACAC---GAAAACUUUUCACU---CUCCGAAUGGAAAU- ((((((((.....))))..(((((.(((..((.(((((((.....)))).)))))))).))))).....))))....---......((((((.(---(...)).)))))).- ( -29.90) >consensus GGACUGCGAAUGGCGCAUUGUGGUGGCCAUGGCAAUGGAAUUUAUUUCCGACUCGGGCGACCACAUUGUGAUCUCAC___U___UCCUUUUGCA___CUUAGCGUUGCAGU_ ....((((.....))))..(((((.(((..((...(((((.....))))).))..))).)))))................................................ (-22.34 = -21.98 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:13 2006