Locus 6967

Sequence ID 2L_DroMel_CAF1
Location 19,338,458 – 19,338,558
Length 100
Max. P 0.560854
window11113

overview

Window 3

Location 19,338,458 – 19,338,558
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 81.25
Mean single sequence MFE -35.92
Consensus MFE -24.80
Energy contribution -25.48
Covariance contribution 0.68
Combinations/Pair 1.05
Mean z-score -1.58
Structure conservation index 0.69
SVM decision value 0.05
SVM RNA-class probability 0.560854
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19338458 100 - 22407834
GGCAUGGGCAUGGGCAUGGGCAUGGGCAUGGGCCUGGGCCCAAGUGACGACUCUUGGCCGGGACACAUCUUUCUGGCCUCGGUGAAAAGGGUCAAUGGAA
.((.(((((..((((....((....))....))))..))))).))...(((((((((((((((.......))))))))........)))))))....... ( -39.30)
>DroSec_CAF1 13829 82 - 1
GG------------------CCAGGGCCUGGGCCUGGGCCCAAGUGACGACUCUUGGCCGGGACACUUAUUUCUGGCCUCGGUGAAAAGGGUCAAUGGAA
((------------------((.((((....)))).))))........(((((((((((((((.......))))))))........)))))))....... ( -34.40)
>DroSim_CAF1 14099 76 - 1
GG------------------------CCUGGGCCUGGGCCCAAGUGACGACUCUUGGCCGGGACACAUCUUUCUGGCCUCGGUGAAAAGGGUCAAUGGAA
.(------------------------(.(((((....))))).))...(((((((((((((((.......))))))))........)))))))....... ( -30.00)
>DroEre_CAF1 11129 94 - 1
GGCCUGGGCAUGG------GCAUGGGCAUGGGCCUGGAACCAAGUGACGACUCUUGGCCGGGACACAUCUUUCUGGCCCCAGUGAAAAGGGUCAAUGGAA
(((((...(((((------((..(((.(((..(((((..(((((........))))))))))...))))))....))))..)))....)))))....... ( -34.10)
>DroYak_CAF1 16670 88 - 1
GGCCUGGGCCUG------------GGCCUGGGCCUGGGUCCAAGUGACGACUCUUGGCCGGGACACAUCUUUCUGGGCUGGGUGAAAAGGGUCAAUGGAA
((((((((((..------------(((....)))..))))).........(.((..(((.(((........))).)))..)).)....)))))....... ( -41.80)
>consensus
GGC_UGGGC_UG________C__GGGCCUGGGCCUGGGCCCAAGUGACGACUCUUGGCCGGGACACAUCUUUCUGGCCUCGGUGAAAAGGGUCAAUGGAA
.........................((.(((((....))))).))...(((((((((((((((.......))))))))........)))))))....... (-24.80 = -25.48 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:10 2006