Locus 6964

Sequence ID 2L_DroMel_CAF1
Location 19,331,715 – 19,331,816
Length 101
Max. P 0.985406
window11110

overview

Window 0

Location 19,331,715 – 19,331,816
Length 101
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 84.54
Mean single sequence MFE -26.88
Consensus MFE -20.60
Energy contribution -22.28
Covariance contribution 1.68
Combinations/Pair 1.10
Mean z-score -2.70
Structure conservation index 0.77
SVM decision value 2.01
SVM RNA-class probability 0.985406
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19331715 101 + 22407834
AAGCUGUGUUUUCCCAGUGCGGAUUACCAAAGGAAUUUGGAGAGUUCGUGCUAUAAAAUACUUUGCGAA----------AGUAACACUAUUGCUAAGCAAAUAGUAUUAAG
.....(((((((...((..((((((.(((((....)))))..))))))..))..))))))).((((...----------.)))).((((((((...)).))))))...... ( -27.60)
>DroSec_CAF1 7137 95 + 1
AAGCUGUGUUUUCCCAGUGCGGAUUACCAAAGGAAUUUGGACAGUUCGUGCUAGAAAAUACUUUGCGAA----------AGUAACACUAUUGCUAAGCAAAUAGU------
.....((((((((..((..((((((.(((((....)))))..))))))..)).)))))))).((((...----------.)))).((((((((...)).))))))------ ( -29.90)
>DroSim_CAF1 7359 101 + 1
AAGCUGUGUUUUCCCAGUGCGGAUUACCAAAGGAAUUUGGAAAGUUCGUGCUAGAAAAUACUUUGCGAA----------AGUAACACUAUUGCUAAGCAAAUAGUAUUAAG
.....((((((((..((..((((((.(((((....)))))..))))))..)).)))))))).((((...----------.)))).((((((((...)).))))))...... ( -30.40)
>DroEre_CAF1 4422 111 + 1
AAGCUGUGUUUUCCCAGUGCGGAUUACCAAAGGAAUUUGAAAACUUCGCUCUAGAAAAUACUUUGCGAAAAGUAGCAAGAGUAAAACUAUUGCAAAGCAAAUUGUAUUAAG
..(((((((((((..((.(((((((..((((....))))..)).))))).)).))))))))..(((.....)))((((.((.....)).))))..)))............. ( -23.70)
>DroYak_CAF1 9929 109 + 1
AAGCUGUGU--UCCCAGUGCGGACUACCAAAGGAAUUUCAAUACUUUGCACUAGAAAAUACUUUGCGAAAAGAAGCAAAAGUAACACUAUUGCAAAGAAAAUUGUAUUAGG
.........--.((.(((((((....))...............(((((((.(((....((((((((........)).))))))...))).)))))))......))))).)) ( -22.80)
>consensus
AAGCUGUGUUUUCCCAGUGCGGAUUACCAAAGGAAUUUGGAAAGUUCGUGCUAGAAAAUACUUUGCGAA__________AGUAACACUAUUGCUAAGCAAAUAGUAUUAAG
..((.((((((((..(((((((((..(((((....)))))...))))))))).))))))))...))...................((((((........))))))...... (-20.60 = -22.28 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:07 2006