Locus 6936

Sequence ID 2L_DroMel_CAF1
Location 19,304,461 – 19,304,553
Length 92
Max. P 0.570252
window11054

overview

Window 4

Location 19,304,461 – 19,304,553
Length 92
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 78.90
Mean single sequence MFE -25.88
Consensus MFE -19.89
Energy contribution -19.53
Covariance contribution -0.36
Combinations/Pair 1.34
Mean z-score -0.97
Structure conservation index 0.77
SVM decision value 0.07
SVM RNA-class probability 0.570252
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19304461 92 - 22407834
-------------GGAAGGGAGAGCUAAGGAGCCACCUCUUGGUUACUCUUGAAGUAGCAA-AGUUGAACACUCAGCACUGCACUUUGCAAGUAUCUGAAGGGAGC
-------------........(.(((....)))).((..(..(.((((..((((((.(((.-.(((((....)))))..)))))))))..)))).)..)..))... ( -24.30)
>DroSec_CAF1 45356 89 - 1
-------------GGAAGGGAGAGCCAAGGAGC---CUCUUGGUUACUCUUGAAGUAGCAA-AGUUGAACACUCAGCACUGCACUUUGCAAGUAUCUGAAGGGAGC
-------------(((.(((((((((((((...---.)))))))).)))))(((((.(((.-.(((((....)))))..)))))))).......)))......... ( -26.10)
>DroSim_CAF1 52750 92 - 1
-------------GGAAGGGAGAGCCAAGGAGCCACCUCUUGGUUACUCUUGAAGUAGCAA-AGUUGAACACUCAGCACUGCACUUUGCAAGUAUCUGAAGGGAGC
-------------(((.(((((((((((((.......)))))))).)))))(((((.(((.-.(((((....)))))..)))))))).......)))......... ( -25.80)
>DroEre_CAF1 50816 92 - 1
-------------AGACGGGAGGGCCAAGGAACCACCUCCUGGUUACUCUUGAAGUAGCAA-AGUUGAACACUCAGCACAGCACUUUGCAAGUAUCUAAAGGAAGC
-------------((((((((((............)))))))..((((..((((((.((..-.(((((....)))))...))))))))..)))))))......... ( -24.80)
>DroYak_CAF1 51483 92 - 1
-------------GGAAGGGAGAGCCAAGAAACCACCUCUUGGUUACUCAUGAAGUAGCAA-AGUUGAACACUCAGCCCAGCACUUUGCAAGUAUCUAAAGGAAGC
-------------(((...(((((((((((.......)))))))).)))..(((((.((..-.(((((....)))))...))))))).......)))......... ( -23.10)
>DroAna_CAF1 74722 104 - 1
CAGUGCAUUCUGCUGGCAGUAGAACCGGAACAGGGCCUUUUGGUUACUUUUGAAGUGGCAAAAGUUGACCAAUCAGCAGUGGACUCUCGGAGUUGCAGGAGGGA--
...((((((((((.....))))))(((((.((..((...(((((((((((((......)))))).)))))))...))..))...)).)))...)))).......-- ( -31.20)
>consensus
_____________GGAAGGGAGAGCCAAGGAACCACCUCUUGGUUACUCUUGAAGUAGCAA_AGUUGAACACUCAGCACUGCACUUUGCAAGUAUCUGAAGGGAGC
.............(((.(((((((((((((.......)))))))).)))))(((((.(((...(((((....)))))..)))))))).......)))......... (-19.89 = -19.53 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:16 2006