Locus 6933

Sequence ID 2L_DroMel_CAF1
Location 19,301,792 – 19,301,904
Length 112
Max. P 0.811677
window11051

overview

Window 1

Location 19,301,792 – 19,301,904
Length 112
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 84.33
Mean single sequence MFE -24.33
Consensus MFE -23.25
Energy contribution -23.50
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.96
SVM decision value 0.65
SVM RNA-class probability 0.811677
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19301792 112 + 22407834
AAGCGCCACUCCAGAGAACCCAGGUCACCAGGUCUCCAAGGCUGCCCACUCC----CACAUCCCCAACCCGCAUCCCGCACCCACAGCCAAUCCUGCCACCAUUCGUGGCGUGUAA
..(((((((....((((.((..(....)..))))))...(((((........----............................)))))................))))))).... ( -24.62)
>DroSec_CAF1 42729 98 + 1
AAGCGCCACUCCAGAGAACCCAGGUCACCAGGUCUCCAAGGCUGCCCACUCC----CACAUUCCC--------------AUCCCCAGCCAAUCCUGCCACCAUUCGUGGCGUGUAA
..(((((((....((((.((..(....)..))))))...(((((........----.........--------------.....)))))................))))))).... ( -24.75)
>DroSim_CAF1 50123 111 + 1
AAGCGCCACUCCAGAGAACCCAGGUCACCAGGUCUCCAAGGCUGCCCACUCC----CACAUCCCCGUCCC-CAUCCCGCAUCCCCAGCCAAUCCUGCCACCAUUCGUGGCGUGUAA
..(((((((....((((.((..(....)..))))))...(((((........----..............-.............)))))................))))))).... ( -24.25)
>DroEre_CAF1 48244 102 + 1
AAGCGCCACUCCAGAAAACCCAGGUCACCAGGUCUCCAAGGCUGGCCACUCCCCACCGCCUCCCUGU--------------CCACAGCCAAUCCUACCACCAUCCGUGGCGUGUAA
..(((((((............((..(....)..))....(((((...((................))--------------...)))))................))))))).... ( -23.69)
>consensus
AAGCGCCACUCCAGAGAACCCAGGUCACCAGGUCUCCAAGGCUGCCCACUCC____CACAUCCCCGU____________AUCCACAGCCAAUCCUGCCACCAUUCGUGGCGUGUAA
..(((((((....((((.((..(....)..))))))...(((((........................................)))))................))))))).... (-23.25 = -23.50 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:13 2006