| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,286,051 – 19,286,166 |
| Length | 115 |
| Max. P | 0.930006 |
| Location | 19,286,051 – 19,286,166 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.93 |
| Mean single sequence MFE | -18.07 |
| Consensus MFE | -11.95 |
| Energy contribution | -12.40 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.930006 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19286051 115 - 22407834 AAAAAAAAAAAUGUUAAUAAAACCAAGAGGAAGCGCAACAGUCGAGUACCUCGAUUAUCAGACACCCUA-----GCACUCUUCUUUAAGAGGCAAAACGAAUGUUUCCUAAAGUUCACAU ....................(((....((((((((....(((((((...))))))).............-----((.(((((....)))))))........))))))))...)))..... ( -22.40) >DroSec_CAF1 26918 96 - 1 AAAAA--A-AAAGUCUAUAAAACCAAGAGGAAGCGCAACAGUCGUGUACAUCGACUAUCAGUUACCCUAUACUA---------------------UACGAAUGUUUCCUAAAGUUCACAU .....--.-...........(((....((((((((....(((((.......)))))...(((........))).---------------------......))))))))...)))..... ( -14.80) >DroSim_CAF1 33976 109 - 1 AAAAAAAA-AAAGUUAAUAAAACCAAGAGGAAGCGCAACAGUCGAGUAACUCGACUAUUAGAUACCCUAUACUAGCACUCCC----------CAAAACGAAUGUUUCCCAAAGUUCACAU ........-.................(.((((((((...(((((((...)))))))..(((.....))).....))..((..----------......))..)))))))........... ( -17.00) >consensus AAAAAAAA_AAAGUUAAUAAAACCAAGAGGAAGCGCAACAGUCGAGUACCUCGACUAUCAGAUACCCUAUACUAGCACUC____________CAAAACGAAUGUUUCCUAAAGUUCACAU ....................(((....((((((((....((((((.....))))))...((.....)).................................))))))))...)))..... (-11.95 = -12.40 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:55 2006