Locus 6919

Sequence ID 2L_DroMel_CAF1
Location 19,281,884 – 19,281,991
Length 107
Max. P 0.865305
window11030

overview

Window 0

Location 19,281,884 – 19,281,991
Length 107
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 77.56
Mean single sequence MFE -18.60
Consensus MFE -13.14
Energy contribution -13.50
Covariance contribution 0.36
Combinations/Pair 1.07
Mean z-score -1.49
Structure conservation index 0.71
SVM decision value 0.85
SVM RNA-class probability 0.865305
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19281884 107 - 22407834
CUUUUUUUUAACA-AUUUCCUUCAG-CUCCAUCAAAUUUCCCACUGGGCUUACCGCAUCCGCAGCUUCCUUCUGCCGCCGACAGUGGGAUCCGCAUUCGCAUUC------GCAUC
.............-..........(-(...........((((((((.((.....)).((.((.((........)).)).))))))))))...((....))....------))... ( -24.50)
>DroSec_CAF1 22921 99 - 1
CUUUUU-UA-ACA-AUUUCCUUCAG-CCCCAUCAAAUUUCCCACUGGGCUUACCGCAUCCGCAGCUUCCAUCUGCCGCCGACAGUGGCAUCCGCA------CUC------GCAUC
......-..-...-.........((-(((................)))))..((((.((.((.((........)).)).))..)))).....((.------...------))... ( -17.09)
>DroSim_CAF1 29827 100 - 1
CUUUUU-UAAACA-AUUUCCUUCAG-CCCCAUCAAAUUUCCCACUGGGCUUACCGCAUCCGCAGCUUCCUUCUGCCGCCGACAGUGGCAUCCGCA------UUC------GCAUC
......-......-.........((-(((................)))))..((((.((.((.((........)).)).))..)))).....((.------...------))... ( -17.09)
>DroEre_CAF1 29218 104 - 1
UUUUUU-UA-ACA-AUUUCCUUCAG-CUCCAUCAAAUUUCCCACUGGGCUUACCGCAUCCGCAGCUUCCUUCUGCCGCCGACAGUGGCAUCCGCAUCCGCACUCGCAU-------
......-..-...-..........(-(.............((((((.((.....)).((.((.((........)).)).)))))))).....((....))....))..------- ( -19.20)
>DroYak_CAF1 29160 112 - 1
CUUCUU-UA-ACAAAUUUCCUUCAA-CUCCAUCAAACUUCCCACUGGGCUUACCGCAUCCGCAUCUUCCUUCUGCCGCCGACAGUGGCAUCAGCAUCCGCAUUCGCAUCCGCAUC
......-..-...............-...................(((((....((....))..........((((((.....))))))..)))....((....))..))..... ( -15.20)
>DroAna_CAF1 45320 86 - 1
ACUUUC-CA-GCC-AUUUCCUACGGUCCCCUUCAAAUUUCCCACUCGGCUUGUGGCAUCCGCUGCCGUCUUCUGCUCUCGACAGUGGCA--------------------------
......-..-(((-(((.............................(((..((((...)))).)))(((..........))))))))).-------------------------- ( -18.50)
>consensus
CUUUUU_UA_ACA_AUUUCCUUCAG_CCCCAUCAAAUUUCCCACUGGGCUUACCGCAUCCGCAGCUUCCUUCUGCCGCCGACAGUGGCAUCCGCA______UUC______GCAUC
........................................((((((.((.....)).((.((.((........)).)).))))))))............................ (-13.14 = -13.50 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:54 2006