Locus 6916

Sequence ID 2L_DroMel_CAF1
Location 19,279,740 – 19,279,830
Length 90
Max. P 0.710106
window11026

overview

Window 6

Location 19,279,740 – 19,279,830
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 92.87
Mean single sequence MFE -26.04
Consensus MFE -21.64
Energy contribution -21.60
Covariance contribution -0.04
Combinations/Pair 1.17
Mean z-score -1.43
Structure conservation index 0.83
SVM decision value 0.37
SVM RNA-class probability 0.710106
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19279740 90 + 22407834
UUUCAGGGCCCUCGCUCCUCGCACCGAAAGCGGAAAUUAAGUUUUUCCAAUAAGAAGAAGAGCGCUUCAGUUGUUUCGCCCUGAACUGCA
.((((((((...(((((.((((.......))(((((.......)))))........)).))))).....(......)))))))))..... ( -27.30)
>DroSec_CAF1 20839 90 + 1
UUUCAGGGCCCUCGCUCCUCGCACCGAAAGCGGAAAUUAAGUUUUUCCAGAAAGAAGGAGAGCGCUUCAGUUGUUUCGCCUUGAACUCCA
.((((((((...((((..(((...))).))))(((((.((((((((((........)))))).)))).....)))))))))))))..... ( -25.60)
>DroSim_CAF1 27791 90 + 1
UUUCAGGGCCCUCGCUCCUCGCACCGAAAGCGGAAAUUAAGUUUUUCCAGAAAGAAGGAGAGCGCUUCAGUUGUUUCGCCUUGAACUCCA
.((((((((...((((..(((...))).))))(((((.((((((((((........)))))).)))).....)))))))))))))..... ( -25.60)
>DroEre_CAF1 27264 88 + 1
UUUCAGGGCCC--GCUGCCCGCACCAAAAGCGGAAAUUAAGUUUUUCCAGAAGGAAGGAGAGCGCUUCAGUUGUUUCUCCUUGAGCUGCA
.....((((..--...))))(((.(......(((((.......)))))..(((((..((.(((......))).))..)))))..).))). ( -26.60)
>DroYak_CAF1 26994 88 + 1
UUUCAGGGCCC--ACUCCUCGCACCAAAAGCGGAAAUUAAGUUUUUCCAGAAAGAAGGAGAGCGCUUCAGUUGUUUCGCCUUGAACUGCA
.((((((((..--.((((((((.......))(((((.......))))).....).)))))(((......))).....))))))))..... ( -25.10)
>consensus
UUUCAGGGCCCUCGCUCCUCGCACCGAAAGCGGAAAUUAAGUUUUUCCAGAAAGAAGGAGAGCGCUUCAGUUGUUUCGCCUUGAACUGCA
.((((((((....((((.((((.......))(((((.......)))))........)).))))((....))......))))))))..... (-21.64 = -21.60 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:50 2006