| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,273,625 – 19,273,737 |
| Length | 112 |
| Max. P | 0.600723 |
| Location | 19,273,625 – 19,273,737 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.62 |
| Mean single sequence MFE | -27.28 |
| Consensus MFE | -21.20 |
| Energy contribution | -21.65 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.600723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19273625 112 + 22407834 -CCCG----CCGGCCACCCAGAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUACAACUUUUGGCCCUACAACAA--- -...(----((((((((...(((.((((((((((....)))).)))))).)))......)))))..........(((((((......))))))).........))))..........--- ( -28.80) >DroSec_CAF1 14882 108 + 1 -CCCG----GCGGCCACCCGGAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUACAACUUUUGGCCCUACA------- -...(----((.(((((..(((.(((((((((((....)))).)))))...)).)))..)))))..........(((((((......)))))))...........))).....------- ( -27.60) >DroSim_CAF1 21764 108 + 1 -CCCG----CCGGCCGCCCAGAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUACAACUUUUGGCCCUACA------- -...(----((((((((...(((.((((((((((....)))).)))))).)))......)))))..........(((((((......))))))).........))))......------- ( -28.40) >DroEre_CAF1 21568 103 + 1 -CCCG----CCGCC-----CGAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUACAACUUUUGGCCCAGCA------- -.(((----((((.-----((((.((((((((((....)))).)))))).)))).....)))))..........(((((((......)))))))..........)).......------- ( -25.90) >DroYak_CAF1 20954 108 + 1 -CCCG----CCGGCCACCCGGAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUACAACUUUUGGCCCUACA------- -...(----((((((((..(((.(((((((((((....)))).)))))...)).)))..)))))..........(((((((......))))))).........))))......------- ( -27.80) >DroAna_CAF1 37222 120 + 1 GCCCGUGGCCCCGCAGUCCGCAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUACAACUUUUUGCUGUGUAAAAAACA (((((((....))).(..((.((.((((((((((....)))).)))))).))))..)..).)))...........((((((......))))))(((((.(.....).)))))........ ( -25.20) >consensus _CCCG____CCGGCCACCCGGAGGAAGCAAUGAAUUCAUUCAUUUGUUUACUCGUUCAAGUGGCAACUUCAUUUUGUAAACACUUUCGUUUACAUACAACUUUUGGCCCUACA_______ ...........(((((....(((.((((((((((....)))).)))))).)))....(((((....).......(((((((......)))))))....)))).)))))............ (-21.20 = -21.65 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:44 2006