Locus 6907

Sequence ID 2L_DroMel_CAF1
Location 19,271,343 – 19,271,455
Length 112
Max. P 0.949873
window11006

overview

Window 6

Location 19,271,343 – 19,271,455
Length 112
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 88.38
Mean single sequence MFE -39.34
Consensus MFE -31.46
Energy contribution -33.78
Covariance contribution 2.32
Combinations/Pair 1.07
Mean z-score -2.13
Structure conservation index 0.80
SVM decision value 1.40
SVM RNA-class probability 0.949873
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19271343 112 + 22407834
CCAGCCAUCUGCCAACUCGAGUGGCCAGCCAAUUAGCGGCAUUUGGGCACGGCCGAGUGGUAAACAUAAUUUUGCGUCUAACCGCAGGCGGAACUGGCAAAAUCCAA----AUCGA
...((((((((((.(((((.(((.((((((.......)))...))).)))...)))))..............((((......))))))))))..)))).........----..... ( -39.20)
>DroSec_CAF1 12576 105 + 1
CCAG-------CCCACUCGAAUGGCCAGCCAAUUAGUGGCAUUUGGGCACGGCCGAGUGGUAAACAUAAUUUUGCGUCUAACCGCAGGCGGAACUGGCAAAAUCCAA----AUCGA
((((-------.(((((((..(((((.((((.....)))).....))).))..)))))))...........((.(((((......))))).))))))..........----..... ( -32.70)
>DroSim_CAF1 19464 112 + 1
CCAGCCAUCUGCCCACUCGAGUGGCCAGCCAAUUAGUGGCAUUUGGGCACGGCCGAGUGGUAAACAUAAUUUUGCGUCUAACCGCAGGCGGAACUGGCAAAAUCCAA----AUCGA
...((((((((((((((((.(((.(((((((.....))))...))).)))...)))))).............((((......))))))))))..)))).........----..... ( -42.70)
>DroEre_CAF1 19363 115 + 1
-GAGCUUUAGGCCCACUCGAGUGGCCGGCCAAUUAGCGGCAUUUGGGCACGCCCGAGUGGUAAACAUAAUUUUGCGUCUAACCGCAGGCGGAACUGGCAAACUCGAAUGGCAUGGC
-..(((....(((...((((((.(((((((..((.((((((((((((....))))))))(((((......)))))......))))))..))..)))))..))))))..)))..))) ( -43.90)
>DroYak_CAF1 18540 106 + 1
CCAGCCAUCUGCCCACUCGAGUGGCCAGCCAAUUAGCAGCAUUUGGGCACGCCCGAGUGGUAAACAUAAUUUUGCGUCUAACCGCAGGCGGAACUGGCAAAAUC----------GC
...((((((((((((((((.((((((.((......))..(....)))).))).)))))).............((((......))))))))))..))))......----------.. ( -38.20)
>consensus
CCAGCCAUCUGCCCACUCGAGUGGCCAGCCAAUUAGCGGCAUUUGGGCACGGCCGAGUGGUAAACAUAAUUUUGCGUCUAACCGCAGGCGGAACUGGCAAAAUCCAA____AUCGA
...((((((((((((((((.(((.((((((.......)))...))).)))...)))))).............((((......))))))))))..)))).................. (-31.46 = -33.78 +   2.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:32 2006