Locus 6906

Sequence ID 2L_DroMel_CAF1
Location 19,271,151 – 19,271,271
Length 120
Max. P 0.761091
window11005

overview

Window 5

Location 19,271,151 – 19,271,271
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.46
Mean single sequence MFE -32.93
Consensus MFE -28.28
Energy contribution -28.97
Covariance contribution 0.68
Combinations/Pair 1.06
Mean z-score -1.76
Structure conservation index 0.86
SVM decision value 0.50
SVM RNA-class probability 0.761091
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19271151 120 - 22407834
UCCGCCAUUAAGCAUACGCCGCGUGGCCGCAUUACAAGAGCAGCUCUCUGAGCACUCUAUUGCCUGAUGCGCGUCACGCUCCUUUGCAUAAUCAGCAGUCCCGUUCUCGUUCUCCUUCCC
...((.((((.(((......((((((((((((((((((((..((((...)))).))))..))..))))))).))))))).....))).))))..))........................ ( -33.60)
>DroSec_CAF1 12390 114 - 1
UCCGCCAUUAAGCAUACGCCGCGUGGCCGCAUUACAAGAGCAGCUCUCUGAGCACUCUAUUGCCUGAUGCGCGUCACGCUCCUUUGCAUAAUCAGCAGUCCCGUUCUCGU------UCCC
...((.((((.(((......((((((((((((((((((((..((((...)))).))))..))..))))))).))))))).....))).))))..))..............------.... ( -33.60)
>DroSim_CAF1 19272 120 - 1
UCCGCCAUUAAGCAUACGCCGCGUGGCCGCAUUACAAGAGCAGCUCUCUGAGCACUCUAUUGCCUGAUGCGCGUCACGCUCCUUUGCAUAAUCAGCAGUCCCGUUCUCGUUCUCGUUCGC
...((.((((.(((......((((((((((((((((((((..((((...)))).))))..))..))))))).))))))).....))).))))..))........................ ( -33.60)
>DroEre_CAF1 19224 91 - 1
UCCGCCAUUAAGCAUACGCCGCGUGGCCGCAUUACAAGAG------------CACUCUAUUGCCUGAUGCGCGUCACGCUCCUUUGCAUAAUCAGCAGUCCCG-----------------
...((.((((.(((......(((((((((((((...((.(------------((......))))))))))).))))))).....))).))))..)).......----------------- ( -28.60)
>DroYak_CAF1 18376 103 - 1
UCCGCCAUUAAGCAUACGCCGCGUGGCCGCAUUACAAGAGCAGCUCUCUGAGCACUCUAUUGCCUGAUGCGCGUCGCGCUCCUUUGCAUAAUCAGCAGUCCCG-----------------
...((.((((.(((......((((((((((((((((((((..((((...)))).))))..))..))))))).))))))).....))).))))..)).......----------------- ( -33.20)
>DroAna_CAF1 34776 103 - 1
AUGGGCAUUACGCAUACGCCGGAUGGCCGCAUUACAAGAGCUGCUCUCUGAGCACUCUAUUGCCUGAUGCGCGCCACGCUCCUUUGCAUAAUCAGGAGUCCCU-----------------
...(((...........)))((.(((((((((((((((((.(((((...)))))))))..))..))))))).)))).((((((..........)))))).)).----------------- ( -35.00)
>consensus
UCCGCCAUUAAGCAUACGCCGCGUGGCCGCAUUACAAGAGCAGCUCUCUGAGCACUCUAUUGCCUGAUGCGCGUCACGCUCCUUUGCAUAAUCAGCAGUCCCG_________________
...((.((((.(((......((((((((((((((((((((..((((...)))).))))..))..))))))).))))))).....))).))))..))........................ (-28.28 = -28.97 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:31 2006