Locus 6899

Sequence ID 2L_DroMel_CAF1
Location 19,263,465 – 19,263,567
Length 102
Max. P 0.815487
window10996

overview

Window 6

Location 19,263,465 – 19,263,567
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 91.79
Mean single sequence MFE -12.69
Consensus MFE -11.76
Energy contribution -11.92
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.93
SVM decision value 0.66
SVM RNA-class probability 0.815487
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19263465 102 + 22407834
UAAA-----------AAAUACA-UUUUGCGAAAAUCAACAGCCAUUGUGAGUGACCGCAAAAUCAAUUUCAAUUGUCAACAAAGUCAAAACACGAUGAAAAUCAUACAAAAAGC------
....-----------.......-(((((.(.....)......(((((((..((((........((((....))))........))))...))))))).........)))))...------ ( -13.09)
>DroSec_CAF1 4857 102 + 1
UAAA-----------AAAUACA-UUUUGCGAAAAUCAACAGCCAUUGUGAGUGACCGCAAAAUCAAUUUCAAUUGUCAACAAAGUCAAAACACGAUGAAAAUCAUACAAAAAGC------
....-----------.......-(((((.(.....)......(((((((..((((........((((....))))........))))...))))))).........)))))...------ ( -13.09)
>DroSim_CAF1 10634 102 + 1
UAAA-----------AAAUACA-UUUUGCGAAAAUCAACAGCCAUUGUGAGUGACCGCAAAAUCAAUUUCAAUUGUCAACAAAGUCAAAACACGAUGAAAAUCAUACAAAAAGC------
....-----------.......-(((((.(.....)......(((((((..((((........((((....))))........))))...))))))).........)))))...------ ( -13.09)
>DroEre_CAF1 11582 102 + 1
UAAA-----------AAAUACA-UUUUGCGAAAAUCAACAGCCAUUGUGACUGACCGCAAAAUCAAUUUCAAUUGUCAACAAAGUCAAAACACGAUGAAAAUCACACAAAAAGC------
....-----------.......-(((((.(.....)......(((((((..((((........((((....))))........))))...))))))).........)))))...------ ( -11.99)
>DroYak_CAF1 10634 102 + 1
UAAA-----------AAAUACA-UUUUGCGAAAAUCAACAGCCAUUGUGACUGACCGCAAAAUCAAUUUCAAUUGUCAACAAAGUCAAAACACGAUGAAAAUCAUACAAAAAGC------
....-----------.......-(((((.(.....)......(((((((..((((........((((....))))........))))...))))))).........)))))...------ ( -11.99)
>DroAna_CAF1 26262 120 + 1
AAAAAAAGUUGAAAAAAAUAAUUUUGUGCGAAAAUCAACAGCCAUUGUGAGUGACCGCAAAAUCAAUUUCAAUUGUCAACAAAGUCAAAACAGGAUGAAAAUAAUACAAAAAGCAAAGCC
.....................((((((((...........))((((.((..((((........((((....))))........))))...)).))))........))))))......... ( -12.89)
>consensus
UAAA___________AAAUACA_UUUUGCGAAAAUCAACAGCCAUUGUGAGUGACCGCAAAAUCAAUUUCAAUUGUCAACAAAGUCAAAACACGAUGAAAAUCAUACAAAAAGC______
..........................................(((((((..((((........((((....))))........))))...)))))))....................... (-11.76 = -11.92 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:23 2006