| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,261,990 – 19,262,108 |
| Length | 118 |
| Max. P | 0.978757 |
| Location | 19,261,990 – 19,262,108 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.89 |
| Mean single sequence MFE | -43.02 |
| Consensus MFE | -22.68 |
| Energy contribution | -24.99 |
| Covariance contribution | 2.31 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.53 |
| SVM decision value | 1.82 |
| SVM RNA-class probability | 0.978757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19261990 118 - 22407834 CAGCGAAACCACGUACAGUGGACACUCGGCUAGCGGGGCAUGUGGGCAACUGGUGCCAAUCACGGAGUCUUGCUGUUAAGGCCGAGGGCGCACUUUAGCCCGCU-UUUUCUCAGUGGGU- ..(((...((((.....))))...(((((((((((((((.((((((((.....))))...))))..)))))))).....)))))))..)))......(((((((-.......)))))))- ( -49.50) >DroSim_CAF1 9185 117 - 1 AAGCGAAACCACGUACAGUGGACACUCGGCUUGCGGGGCAUUUGGGCAACUGGUGCCAAUCACG-AGUCUUGCUGUUGAGGCCGAGGGCGCACUUUAGCCCGCU-UUUUCGCAGUGGGC- ..(((...((((.....))))...((((((((((((((((.(..(....)..))))).....((-(...)))))))..))))))))..)))......(((((((-.......)))))))- ( -46.10) >DroYak_CAF1 9143 113 - 1 AUGCGAAACCACGUACAGUGGACACUCGGCUUCAGGGGCAUC----CGACUGGUGUCAAUCACU-AGUCUUGCUGUUAAGGCCGAGGGCGCACUUUAGCCCGGU-UUUUCGUAGUGGGU- .(((((((((((.....))))....(((((((.((.((((..----.((((((((.....))))-)))).)))).)).)))))))((((........))))...-.)))))))......- ( -49.00) >DroAna_CAF1 24872 96 - 1 CUGAAAAACCACGUAAAGUGGAUAGUGCCAUUGGGGGG----------ACU--------------UGUUGGGUUGUUUAAAGCGAGGAUAUACUUUGAGCGACCGUGGGAGAACUGGGAG ........((((.....)))).((((.((...(((...----------.))--------------)....((((((((((((..........))))))))))))...))...)))).... ( -27.50) >consensus AAGCGAAACCACGUACAGUGGACACUCGGCUUGCGGGGCAU_____CAACUGGUGCCAAUCACG_AGUCUUGCUGUUAAGGCCGAGGGCGCACUUUAGCCCGCU_UUUUCGCAGUGGGU_ ..(((...((((.....))))...((((((((..(.((((..........((((....))))........)))).)..))))))))..)))......(((((((........))))))). (-22.68 = -24.99 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:21 2006