Locus 689

Sequence ID 2L_DroMel_CAF1
Location 2,007,495 – 2,007,608
Length 113
Max. P 0.999831
window1125

overview

Window 5

Location 2,007,495 – 2,007,608
Length 113
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 97.34
Mean single sequence MFE -26.58
Consensus MFE -26.36
Energy contribution -26.12
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -2.39
Structure conservation index 0.99
SVM decision value 4.19
SVM RNA-class probability 0.999831
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2007495 113 - 22407834
GGCCAAAACGAAACCAAAAGCCGAUAUAGAAACAGUCAGCGAAAGGACAGUGAGUUGACAAAAAGAACCGACACACAUU-UGGGGUUUUUGGGGAAGGGGUUAGUAUGGAAAGU
((((....(....(((((((((............((((((.............))))))........((((.......)-))))))))))))....).))))............ ( -26.12)
>DroSec_CAF1 25114 112 - 1
GGCCAAAACGAAACCAAAAGCCGAUAUAAAAAGAGUCAGCGAAAGGACAGUGAGUUGACAAAAAGAA-CGACACACAUU-UGGGGUUUUUGGGGAAGGGGUUAGUAUGGAAAGU
((((....(....(((((((((............(((..(....)))).(((.((((..........-)))).)))...-...)))))))))....).))))............ ( -25.50)
>DroSim_CAF1 21951 112 - 1
GGCCAAAACGAAACCAAAAGCCGAUAUAAAAAGAGUCAGCGAAAGGACAGUGAGUUGACAAAAAGAA-CGACACACAUU-UGGGGUUUUUGGGGAAGGGGUUAGUAUGGAAAGU
((((....(....(((((((((............(((..(....)))).(((.((((..........-)))).)))...-...)))))))))....).))))............ ( -25.50)
>DroEre_CAF1 22007 112 - 1
GGCCAAAACGAAACCAAAAGCCGAUAUAAAAAGAGUCAGCGAAAGGACAGUGAGUUGACAAAAAGAA-CGACACACAUU-UGGGGCUUUUGGGGAAGGGGUUAGUAUGGAAAGU
((((....(....(((((((((............(((..(....)))).(((.((((..........-)))).)))...-...)))))))))....).))))............ ( -27.90)
>DroYak_CAF1 26426 113 - 1
GGCCAGAACGAAACCAAAAGCCGAUAUAAAAAGAGUCAGCGAAAGGACAGUGAGUUGACAAAAAGAA-CGACACACAUUUUGGGGCUUUUGGGGAAGGGGUUACUAUGGAAAGU
((((....(....(((((((((............(((..(....)))).(((.((((..........-)))).))).......)))))))))....).))))............ ( -27.90)
>consensus
GGCCAAAACGAAACCAAAAGCCGAUAUAAAAAGAGUCAGCGAAAGGACAGUGAGUUGACAAAAAGAA_CGACACACAUU_UGGGGUUUUUGGGGAAGGGGUUAGUAUGGAAAGU
((((....(....(((((((((............(((..(....)))).(((.((((...........)))).))).......)))))))))....).))))............ (-26.36 = -26.12 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:56 2006