| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,002,343 – 2,002,435 |
| Length | 92 |
| Max. P | 0.960917 |
| Location | 2,002,343 – 2,002,435 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 82.08 |
| Mean single sequence MFE | -20.14 |
| Consensus MFE | -13.66 |
| Energy contribution | -13.70 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.960917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2002343 92 - 22407834 UUAAACUGCAUAUAUGAUUAGAAGUAGUGAACUCUCACUAUUUCCCAUCAAAGAAGUCCUUAUGCACUUGAGAUUGACCUGAAACUUACCAG--- ......(((((...((((..((((((((((....))))))))))..))))(((.....))))))))............(((........)))--- ( -19.00) >DroSec_CAF1 19939 92 - 1 UUAAACUGCAUCUAUGAUUCGAAGUAGUGAACUCUCACUAUUUCCCAUCAAAGAAGUCCUUCUGCACUUGAAAUUGACCUGAAACUUACCAC--- ..........(((.((((..((((((((((....))))))))))..)))).))).(((.(((.......)))...)))..............--- ( -18.70) >DroSim_CAF1 16777 92 - 1 UUAAACUGCAUCUAUGAUUCGAAGUAGUGAACUCUCACUACUUCCCAUCAAAGAAGUCCUUAUGCACUUGAGAUUGACCUGAAACUCACCAC--- ......(((((((.((((..((((((((((....))))))))))..)))).)))........))))..((((.((......)).))))....--- ( -22.70) >DroEre_CAF1 16899 95 - 1 UUAAGCAGCAACUAUGAUUCGAAGUAGUGAACUCCCACUAUUUCCCAUCCAGCCAGUGGCCCAGUACCUGUGAUUGACCUGAAACUCACCAUGGA ...........(((((....(((((((((......))))))))).....(((.((((.((.........)).))))..)))........))))). ( -19.70) >DroYak_CAF1 21325 83 - 1 UUAAGC-GCAACUAUGAUUCGAAGUAGUGAACUCCCACUAUUUCCGAUCAAAG--------GAGUACUUCUGAUUGACCUCAAACUCACCAC--- ..(((.-.(..((.(((((.(((((((((......))))))))).))))).))--------..)..))).((((((....)))..)))....--- ( -20.60) >consensus UUAAACUGCAUCUAUGAUUCGAAGUAGUGAACUCUCACUAUUUCCCAUCAAAGAAGUCCUUAUGCACUUGAGAUUGACCUGAAACUCACCAC___ ..............((((..(((((((((......)))))))))..))))............................................. (-13.66 = -13.70 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:54 2006