Locus 6867

Sequence ID 2L_DroMel_CAF1
Location 19,216,614 – 19,216,708
Length 94
Max. P 0.509324
window10947

overview

Window 7

Location 19,216,614 – 19,216,708
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 90.28
Mean single sequence MFE -26.02
Consensus MFE -20.39
Energy contribution -19.95
Covariance contribution -0.44
Combinations/Pair 1.25
Mean z-score -2.34
Structure conservation index 0.78
SVM decision value -0.05
SVM RNA-class probability 0.509324
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19216614 94 - 22407834
CAAGUAUGUGCUUAUCCUGCUUCAAAGACUUCGUGAAUGGCUUUAAUGGCAGUCGCUUUAUUUUGGGAAUAUCUGCGAUAAGCAUGUAUUAUGU
..(((((((((((((((((((..((((.((........))))))...)))))..((..(((((...)))))...)))))))))))))))).... ( -26.70)
>DroSec_CAF1 36549 92 - 1
CAAGUAUGUGCUUAUCCUGCUU--AAGACUUCGUGAAUGGCUUUAAUGGCAGUCGCUUUAUUUUGGGAAUAUCUGCGAUAAGCAUGUAUUAUGU
..(((((((((((((((..(((--((((....((((...(((.....)))..))))....))))))).......).)))))))))))))).... ( -25.60)
>DroSim_CAF1 38330 94 - 1
CAAGUAUGUGCUUAUCCUGCUUCAAAGACUUCGUGAAUGGCUUUAAUGGCAUUCGCUUUAUUUUGGGAAUAUCUGCGAUAAGCAUGUAUUAUGU
..((((((((((((((..((..(((((.....(((((((.(......).)))))))....)))))((.....)))))))))))))))))).... ( -27.40)
>DroEre_CAF1 36268 94 - 1
CAAGUAUGUGCUUAUCCUGCUUCAAAGACUUCAUGAAUGGCUUUAAUGGCAGUCGCCUCUUUUUGGGAAUAUCUGCGAUAAGCAUGUAUUAUGU
..(((((((((((((((((((..((((.((........))))))...)))))((.((.......))))........)))))))))))))).... ( -26.30)
>DroYak_CAF1 37942 94 - 1
CAAGUAUGUGCUUAUCCUGCUUCCAAGACUUCAUGAAUGGCUUUAAUGGCAGUCGCUUUAUUUUGGGAAUAUCUGCGAUAAGCGUGUAUUAUGU
..((((..((((((((..((((((((((.....(((...(((.....)))..))).....))))))))......))))))))))..)))).... ( -25.00)
>DroAna_CAF1 85433 94 - 1
CAAGUAUGUGCUUAUCCCACUUUAACAAUUUCAUGCUUGGCCCAAAUGGAAGGCGUUUUAUUUUGGAAAUGGCUGCGAUAAGCAUGUAUUAUGG
..(((((((((((((((((.(((...(((...((((((..((.....)).))))))...)))...))).)))....)))))))))))))).... ( -25.10)
>consensus
CAAGUAUGUGCUUAUCCUGCUUCAAAGACUUCAUGAAUGGCUUUAAUGGCAGUCGCUUUAUUUUGGGAAUAUCUGCGAUAAGCAUGUAUUAUGU
..((((..((((((((..................((...(((.....)))..))((..(((((...)))))...))))))))))..)))).... (-20.39 = -19.95 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:39 2006