Locus 6861

Sequence ID 2L_DroMel_CAF1
Location 19,188,903 – 19,188,994
Length 91
Max. P 0.999859
window10938

overview

Window 8

Location 19,188,903 – 19,188,994
Length 91
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 88.24
Mean single sequence MFE -36.22
Consensus MFE -35.76
Energy contribution -35.35
Covariance contribution -0.41
Combinations/Pair 1.10
Mean z-score -3.05
Structure conservation index 0.99
SVM decision value 4.28
SVM RNA-class probability 0.999859
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19188903 91 + 22407834
GGUGGCUCUGUGGCCCAGCUCGUUAGCGAAAUGAGCGGAUAUGUAAAGUCGGUGCAGUUGAUGGAUUUUGCGGUUGCAAUGAGUGACCAA-----A----------------
(((.((((((..(((..(((((((.....)))))))......((((((((.((.......)).)))))))))))..))..)))).)))..-----.---------------- ( -36.60)
>DroSec_CAF1 8915 91 + 1
GGUGGCUCUGUGGCCCAGCUCGUUAGCGAAAUGAGCGGAUAUGUAAAGUCGGUGCAGUUGAUGGAUUUUGCGGUUGCAAUGAGUGACCAA-----A----------------
(((.((((((..(((..(((((((.....)))))))......((((((((.((.......)).)))))))))))..))..)))).)))..-----.---------------- ( -36.60)
>DroSim_CAF1 10177 91 + 1
GGUGGCUCUGUGGCCCAGCUCGUUAGCGAAAUGAGCGGAUAUGUAAAGUCGGUGCAGUUGAUGGAUUUUGCGGUUGCAAUGAGUGACCAA-----A----------------
(((.((((((..(((..(((((((.....)))))))......((((((((.((.......)).)))))))))))..))..)))).)))..-----.---------------- ( -36.60)
>DroEre_CAF1 9057 102 + 1
GGUGGCUCUGUGGCCCAGCUCGUUAGCGAAAUGAGCGGAUAUGUAAAGUCGGUGCAGUUGAUGGAUUUUGCGGUUGCAAUGAGUGACCAA-----A-----GGGGUUUGGGC
(((.((((((..(((..(((((((.....)))))))......((((((((.((.......)).)))))))))))..))..)))).)))..-----.-----........... ( -36.60)
>DroYak_CAF1 10008 99 + 1
GGUGGCUCUGUGGCCCAGCUCGUUAGCGAAAUGAGCGGAUAUGUAAAGUCGGUGCAGUUGAUGGAUUUUGCGGCUGCAAUGAGUGACCAA-----AGGGGU-----UUG---
(((.((((((..(((..(((((((.....)))))))......((((((((.((.......)).)))))))))))..))..)))).)))..-----......-----...--- ( -38.00)
>DroAna_CAF1 59282 109 + 1
GGUGGUUCUGUGGCCCAGCUCGUUAGCGAAAUGAGCGGAUAUGUAAAGUCGGUGCAGUUGAUGGGUUUUGCGGUUGCAACGAGUGACCAGUAACCAGG---AGGAUGCGCUC
(((..(((((..(((((((((((((((.......((.(((.......))).))...))))))))))..)).)))..))..)))..))).(((.((...---.)).))).... ( -32.90)
>consensus
GGUGGCUCUGUGGCCCAGCUCGUUAGCGAAAUGAGCGGAUAUGUAAAGUCGGUGCAGUUGAUGGAUUUUGCGGUUGCAAUGAGUGACCAA_____A________________
(((.((((((..(((..(((((((.....)))))))......((((((((.((.......)).)))))))))))..))..)))).)))........................ (-35.76 = -35.35 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:31 2006