Locus 686

Sequence ID 2L_DroMel_CAF1
Location 2,002,008 – 2,002,101
Length 93
Max. P 0.815325
window1122

overview

Window 2

Location 2,002,008 – 2,002,101
Length 93
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 85.41
Mean single sequence MFE -23.12
Consensus MFE -16.91
Energy contribution -17.47
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.93
Structure conservation index 0.73
SVM decision value 0.66
SVM RNA-class probability 0.815325
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2002008 93 + 22407834
GCUCAUAAAUGUUUAAUUCCUUAGUUGCCAACUGAAUGAAACUCCUCUCGUUU-----------GGCAGUCCUGCCGAAUCACAACUAAGAGGACAAGUAAACA
.........((((((.(((((((((((......((((((........))))))-----------((((....))))......)))))))).)))....)))))) ( -22.60)
>DroSec_CAF1 19604 93 + 1
GCUCAUAAAUGUUUAAUUCCUUAGUUGCCAACUGAAUGAAACUGCUCUCGUUA-----------GGCAGUCCUGCCGAAUCACAGCUAAGAGGACAAGUAAACA
.........((((((.(((((((((((.......(((((........))))).-----------((((....))))......)))))))).)))....)))))) ( -21.70)
>DroEre_CAF1 16548 101 + 1
GCUCAUAAAUGUUUAAUUCCUUAGUUACCAACUG---GAAACUGCACUCGUUUGCCCAGCAAUUGGCAGUCCUGCCGAAUCACAACUAAGAGGACAAGUAAACA
.........((((((.((((((((((.....(((---(.....(((......)))))))...((((((....)))))).....))))))).)))....)))))) ( -23.70)
>DroYak_CAF1 20968 100 + 1
GCUCAUAAAUGUUUAAUUCCUUAGUUAGCAACUG----AAACUUCACUCGUUUGCUCAGCAGUUGGCAGUGCUGCCGAAUCACAACUAAGAGGACAUGUAAACA
.........((((((..(((((.((((((((.((----(........))).))))).)))..((((((....))))))...........)))))....)))))) ( -24.50)
>consensus
GCUCAUAAAUGUUUAAUUCCUUAGUUACCAACUG___GAAACUGCACUCGUUU___________GGCAGUCCUGCCGAAUCACAACUAAGAGGACAAGUAAACA
.........((((((.(((((((((((...........((((.......))))...........((((....))))......)))))))).)))....)))))) (-16.91 = -17.47 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:53 2006