Locus 6856

Sequence ID 2L_DroMel_CAF1
Location 19,185,049 – 19,185,151
Length 102
Max. P 0.806524
window10930

overview

Window 0

Location 19,185,049 – 19,185,151
Length 102
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 81.02
Mean single sequence MFE -18.20
Consensus MFE -15.14
Energy contribution -14.70
Covariance contribution -0.44
Combinations/Pair 1.31
Mean z-score -1.62
Structure conservation index 0.83
SVM decision value 0.63
SVM RNA-class probability 0.806524
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19185049 102 + 22407834
CCCGCCAUAAACACG-----UUAACUUUUCAUUUGUACACUCUUCACCCGAACACAUCUCGUCCAGCUUUGGGCAAGCCCAACACUGUUGUUUGUCACUCGCUGCUU
...((.(((((((..-----............................(((.......)))..(((..(((((....)))))..))).))))))).....))..... ( -14.50)
>DroSec_CAF1 5039 102 + 1
CCCGCCAUGAACACC-----UUAACUUUUCAUUUGUACACUCUUCACCCGCACACAUCUCGUCCAGCUUUGGGCAAGCCCAACACUGUGGUUUGCCACUCGCUGCUU
...((..((((....-----...((.........))......))))...))............((((....((((((((((....)).))))))))....))))... ( -20.62)
>DroSim_CAF1 6353 102 + 1
CCCGCCAUGAACACC-----UUAACUUUUCAUUUGUACACUCUUCACCCCCACACAUCUCGUCCAGCUUUGGGCAAGCCCAACACUGUGGUUUGCCACUCGCUGCUU
...((.(((((....-----.......)))))..))...........................((((....((((((((((....)).))))))))....))))... ( -19.80)
>DroEre_CAF1 5320 100 + 1
CCCAUCAUAAACACC-----AUAACUUUUCAUUUGCACACUCUUCACCC--ACACAUAUCGUCCAGCUUUGGGCAAGCCCCACACUGUGGUUUGCCACUCGCUGCUU
...............-----.............................--............((((....((((((((.(.....).))))))))....))))... ( -18.90)
>DroYak_CAF1 6177 99 + 1
CCGAUCGUAAACAC------UUAACUUUUCAUUUGCACACUCUUCACCC--ACACAUGUUGUCCAGCAUUGGGCAAGCCCCACACUGUGGUUUGCCACUCGCUGCUU
......(((((...------...........))))).............--............((((....((((((((.(.....).))))))))....))))... ( -19.44)
>DroMoj_CAF1 20642 96 + 1
---GACA--CUUAGCUUAACACA--UUUUCAUUUGCACAUUG-UCAUCC---AACACCCGGUCUAGCACUGGGCAAGCCUCCCACCAUCGUUUGUCACUCGUUGCUU
---((((--....((........--.........))....))-))...(---(((.((((((.....))))))(((((...........)))))......))))... ( -15.93)
>consensus
CCCGCCAUAAACACC_____UUAACUUUUCAUUUGCACACUCUUCACCC__ACACAUCUCGUCCAGCUUUGGGCAAGCCCAACACUGUGGUUUGCCACUCGCUGCUU
...............................................................((((....(((((((((......).))))))))....))))... (-15.14 = -14.70 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:24 2006