Locus 6849

Sequence ID 2L_DroMel_CAF1
Location 19,154,617 – 19,154,718
Length 101
Max. P 0.520474
window10918

overview

Window 8

Location 19,154,617 – 19,154,718
Length 101
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 93.85
Mean single sequence MFE -20.35
Consensus MFE -17.67
Energy contribution -17.93
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.87
SVM decision value -0.03
SVM RNA-class probability 0.520474
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19154617 101 - 22407834
UGCUGCAGAUAUGUAUAUCUUGUAGCAUACGUACAUAGGCUAGGUAUGUGUAUGUUUCUGUUGCACUUAGAUUUACUUAAUAUUCCACUAGUAUUAAUACU
(((((..((((((((.(((((((((((.(((((((((.((...)).)))))))))...)))))))...)))).)))...)))))....)))))........ ( -22.30)
>DroSim_CAF1 35160 101 - 1
UGCUGCAGAUAUGUAUAUCUUGUAGCAUACGUACAUAGGCUAGGUAUGUGUAUGUUUCUGUUGCACUUAGAUUUACUUAAUAUUCCACUAGUAUUAAUACU
(((((..((((((((.(((((((((((.(((((((((.((...)).)))))))))...)))))))...)))).)))...)))))....)))))........ ( -22.30)
>DroEre_CAF1 33795 97 - 1
UGUUGCUAAU----AUAUCUUGUAGCAUACGUACAUAGGCUAGGUAUGUGUAUGUUUCUGUUGCACUUAGAUUUACUUAAUAUUCCACUAGUAUUAAUACU
.........(----(.(((((((((((.(((((((((.((...)).)))))))))...)))))))...)))).)).((((((((.....)))))))).... ( -19.10)
>DroYak_CAF1 33800 97 - 1
UGCUGCUUAU----AUAUCUUGUAGCAUACGUACAUAAGCUAGGUAUGUGUAUUUUUCUGUUGCACUUAGAUUUAGUUAAUAUUCCACUAGUAUUAAUACU
((((((....----.......))))))...(((.....(((((((..(((((.........)))))....)))))))(((((((.....))))))).))). ( -17.70)
>consensus
UGCUGCAGAU____AUAUCUUGUAGCAUACGUACAUAGGCUAGGUAUGUGUAUGUUUCUGUUGCACUUAGAUUUACUUAAUAUUCCACUAGUAUUAAUACU
................(((((((((((.(((((((((.((...)).)))))))))...)))))))...))))....((((((((.....)))))))).... (-17.67 = -17.93 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:13 2006