| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,153,843 – 19,153,963 |
| Length | 120 |
| Max. P | 0.915239 |
| Location | 19,153,843 – 19,153,963 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.69 |
| Mean single sequence MFE | -38.12 |
| Consensus MFE | -29.31 |
| Energy contribution | -29.25 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.661984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19153843 120 + 22407834 CACUGCACUGGUUCUAUGCAUGGGGCUUAGCCCCCAAAAAAUGGCUAGAUAGUACAAGUUACCCCACGACCAGUGGCGCGGUUUCCACUGCUUCCGCUCUUUGUAGCCCUUUUUCGGGCU .((((..((((((........(((((...)))))........)))))).))))............((((..(((((.(((((....)))))..)))))..))))(((((......))))) ( -36.39) >DroSim_CAF1 34391 119 + 1 CACUGCACUGGUUCUAUGCAUGGGGCUUAGCCCCCAAAAAAUCGCCAGAUAGUACAAGUUACCCCACGACCAGUG-CGCGGUUUCCACUGCAUCCGCUCUUCGCAGCCCUUUUUCGGGCU ....(((((((((........(((((...)))))......(((....))).................))))))))-)(((((....)))))....((.....))(((((......))))) ( -39.40) >DroEre_CAF1 33014 118 + 1 CACUGCACUGGUUCUAUGCAUGGGGCUGAGCCCCAAAAAACUCGACAGAUAGUACAAGUUGCCCCACGACCAGUGUGGUG--UUCCACCGCUUCCGCUCUUCGCAGCCCUUUUUCGGGCU (((..((((((((....((.((((((...))))))...((((.(((.....)).).)))))).....))))))))..)))--.............((.....))(((((......))))) ( -42.20) >DroYak_CAF1 33022 117 + 1 UAAUGCACUGGUUCUAUGCAUGGGGCUUAGCCACAAAAAA-UCGGCAGAUAGUACAAGUUACCCCACGACCAGUGUGGCG--UUCCACCGCUUCCGCUCGCCGCAGCCCUUUUUCGGGCU ....(((((((((.......(((((....(((........-..))).(((.......))).))))).)))))))))((((--.......((....)).))))..(((((......))))) ( -34.50) >consensus CACUGCACUGGUUCUAUGCAUGGGGCUUAGCCCCAAAAAAAUCGCCAGAUAGUACAAGUUACCCCACGACCAGUGUCGCG__UUCCACCGCUUCCGCUCUUCGCAGCCCUUUUUCGGGCU .....((((((((........(((((...))))).................(((.....))).....))))))))..((((......))))....((.....))(((((......))))) (-29.31 = -29.25 + -0.06)
| Location | 19,153,843 – 19,153,963 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.69 |
| Mean single sequence MFE | -45.62 |
| Consensus MFE | -35.94 |
| Energy contribution | -36.81 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.915239 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19153843 120 - 22407834 AGCCCGAAAAAGGGCUACAAAGAGCGGAAGCAGUGGAAACCGCGCCACUGGUCGUGGGGUAACUUGUACUAUCUAGCCAUUUUUUGGGGGCUAAGCCCCAUGCAUAGAACCAGUGCAGUG (((((......))))).......((....)).((((...))))((.((((((((((((((.....(......)(((((..........))))).))))))))......)))))))).... ( -44.00) >DroSim_CAF1 34391 119 - 1 AGCCCGAAAAAGGGCUGCGAAGAGCGGAUGCAGUGGAAACCGCG-CACUGGUCGUGGGGUAACUUGUACUAUCUGGCGAUUUUUUGGGGGCUAAGCCCCAUGCAUAGAACCAGUGCAGUG (((((......)))))((.....((((...(....)...))))(-((((((((((.(((((........))))).)))).......(((((...)))))..........))))))).)). ( -47.40) >DroEre_CAF1 33014 118 - 1 AGCCCGAAAAAGGGCUGCGAAGAGCGGAAGCGGUGGAA--CACCACACUGGUCGUGGGGCAACUUGUACUAUCUGUCGAGUUUUUUGGGGCUCAGCCCCAUGCAUAGAACCAGUGCAGUG (((((......)))))((.....((....)).((((..--..))))((((((((((((((.....(.((.....)))((((((....)))))).))))))))......)))))))).... ( -47.50) >DroYak_CAF1 33022 117 - 1 AGCCCGAAAAAGGGCUGCGGCGAGCGGAAGCGGUGGAA--CGCCACACUGGUCGUGGGGUAACUUGUACUAUCUGCCGA-UUUUUUGUGGCUAAGCCCCAUGCAUAGAACCAGUGCAUUA (((((......)))))..(((..((....))(......--)))).(((((((((((((((.....(......).((((.-.......))))...))))))))......)))))))..... ( -43.60) >consensus AGCCCGAAAAAGGGCUGCGAAGAGCGGAAGCAGUGGAA__CGCCACACUGGUCGUGGGGUAACUUGUACUAUCUGGCGAUUUUUUGGGGGCUAAGCCCCAUGCAUAGAACCAGUGCAGUG (((((......))))).......((....))((((.....)))).(((((((((((((((.....((.(((..............))).))...))))))))......)))))))..... (-35.94 = -36.81 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:12 2006