Locus 6844

Sequence ID 2L_DroMel_CAF1
Location 19,139,017 – 19,139,111
Length 94
Max. P 0.894588
window10911

overview

Window 1

Location 19,139,017 – 19,139,111
Length 94
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 89.72
Mean single sequence MFE -28.68
Consensus MFE -25.89
Energy contribution -25.70
Covariance contribution -0.19
Combinations/Pair 1.05
Mean z-score -1.77
Structure conservation index 0.90
SVM decision value 0.98
SVM RNA-class probability 0.894588
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19139017 94 + 22407834
CUACGCCAAAGUUCUUUUGGGAAAUUAGUGGGGAGUAACCCACUCGAAAUGGCAGUGGAAACAUUCAAAGGCCCCUGGGAGAAUGAGAGGUCGC
...((((...(((((((..((.....((((((......))))))......(((((((....)))).....)))))..)))))))....)).)). ( -32.80)
>DroSim_CAF1 26756 94 + 1
CUACGUCAAAGUUCUUUGGGGAAAUUAGUGGGGAGUAACCCACUCGAAGUGGCAGAGGAAACGUUCAAAGGCCCCUGGGAGAAUGAGAGGUCGC
..((.((...(((((((.(((.....((((((......))))))......(((....((.....))....)))))).)))))))..)).))... ( -29.00)
>DroEre_CAF1 25381 94 + 1
CUACAUUAAAGUUCUUCGGGGAAAUUAGUGGGGAGUAACCCACUCGAAGUGGCAGAGGAAACGUUCAAAGGCCCCUGGGAGAAUGAGAGGUCGC
..........(((((((.(((.....((((((......))))))......(((....((.....))....)))))).))))))).......... ( -27.60)
>DroYak_CAF1 25570 84 + 1
CUACGCCAAAGUUCUUUGGGGAAAUUAGUGGGGAGUAACCCACUCGAAGUGGCAGAGGAAUCGUUCAAAGGCCCCUGGGAGAAU----------
..........(((((((.(((.....((((((......))))))......(((....((.....))....)))))).)))))))---------- ( -25.30)
>consensus
CUACGCCAAAGUUCUUUGGGGAAAUUAGUGGGGAGUAACCCACUCGAAGUGGCAGAGGAAACGUUCAAAGGCCCCUGGGAGAAUGAGAGGUCGC
..........(((((((.(((.....((((((......))))))......(((....((.....))....)))))).))))))).......... (-25.89 = -25.70 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:06 2006