| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,996,710 – 1,996,820 |
| Length | 110 |
| Max. P | 0.555307 |
| Location | 1,996,710 – 1,996,820 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 82.88 |
| Mean single sequence MFE | -37.43 |
| Consensus MFE | -23.39 |
| Energy contribution | -23.03 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.555307 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1996710 110 + 22407834 UU-UUUUAUUGCCCCAAAAGGGGGAAAAUGAGGGUUGGCAGGAGGGUG-CGAAGUAUCCUGGUAAUUGGGAACGUGCUUGGCAUUGCCAAUGAGCCUUCAUUUUGUC----CGAGG ..-........((((....)))).((((((((((((.(..((..((((-(.((((((((..(...)..)))...))))).))))).))..).))))))))))))...----..... ( -39.30) >DroSec_CAF1 14395 107 + 1 UU-UUUUAUUGCCCCGAAAGGGGAUAAAC---UGUUGGCAGGAGGGUG-CGCAGUAUCCUGGUAAUUGGGAACGUGCUUGGCAUUGCCAAUGAGCCUCCAUUUUGUC----CGAAG ..-........((((....))))......---..(((((((((((.((-(((.((.(((..(...)..)))))))))(((((...)))))..).)))))....)).)----))).. ( -36.60) >DroSim_CAF1 11242 107 + 1 UU-UUUUAUUGCCCCAAAAGGGGGUAAAC---UGUUGGCAGGAGGGUG-CGAAGUAUCCUGGUAAUUGGGAACGUGCUUGGCAUUGCCAAUGAGCCUCCAUUUUGUC----CGAGG ..-.....(((((((.....)))))))..---.(((((((.....(((-(.((((((((..(...)..)))...))))).)))))))))))...((((.........----.)))) ( -34.90) >DroEre_CAF1 11245 107 + 1 UU-UUUUAUUGCCCCAAA-GGGGGUAAAC---UGUUGGCAGCAGGGUGGAGAAGCAUCCUGGUAAUUGGGAGCCUGCUUGGCAUAACCAAUGAGCCUCCAUUUGGCU----CAAGG ..-.....(((((((...-.))))))).(---((....)))(((((((......)))))))...(((((..(((.....)))....)))))(((((.......))))----).... ( -40.50) >DroYak_CAF1 15453 107 + 1 UUUUUUUAUUGCCCCAAA-GGGGGUAAAC---UGUUGGCAGGAGGGUG-CGAAGUAUCCUGGUAAUUGGGAGCGUGCUUCGCAUUGCCAAUGAGCCUCCAUUUUGUU----CAGGG ........(((((((...-.)))))))..---.(((((((.....(((-((((((((((..(...)..)))...)))))))))))))))))((((.........)))----).... ( -37.90) >DroAna_CAF1 11248 111 + 1 UUUUUUUAUUGCUCCUAAAGGGGGUUAA----GGUUGCUGUAAGGAUG-CGAAGUAUCCUUGUAAUUGGGCGCGUGCUCGGCAUUAGCAAUGACCGUCCAUUGGGGUAUCCCCUUU .........(((.(((((.(((((((..----.(((((((((((((((-(...)))))))))...((((((....))))))...))))))))))).))).))))))))........ ( -35.40) >consensus UU_UUUUAUUGCCCCAAAAGGGGGUAAAC___UGUUGGCAGGAGGGUG_CGAAGUAUCCUGGUAAUUGGGAACGUGCUUGGCAUUGCCAAUGAGCCUCCAUUUUGUC____CGAGG ........(((((((.....))))))).........((((((((((((......))))).(((.(((((....((((...))))..)))))..)))....)))))))......... (-23.39 = -23.03 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:49 2006