Locus 6839

Sequence ID 2L_DroMel_CAF1
Location 19,135,456 – 19,135,574
Length 118
Max. P 0.579309
window10905

overview

Window 5

Location 19,135,456 – 19,135,574
Length 118
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 91.38
Mean single sequence MFE -28.85
Consensus MFE -21.12
Energy contribution -20.75
Covariance contribution -0.38
Combinations/Pair 1.15
Mean z-score -1.88
Structure conservation index 0.73
SVM decision value 0.09
SVM RNA-class probability 0.579309
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19135456 118 - 22407834
CCACACCCAAAAUAACCUCGCGGGGGCGGAGGCAAUAAAAUCAUUUUAUGUCCAUAC-CCCCAAAGGUAAAAUAACACUAAAACAAAAGCUCGCGAGCGGUAGUGCUCUCUACACAGAG
.((((((.......((((...(((((..(.((((.((((.....)))))))))...)-))))..))))....................(((....)))))).)))((((......)))) ( -27.60)
>DroSim_CAF1 23254 118 - 1
CCACACCCAAAAUAACCUCGCGGGGGCGGAGGCAAUAAAAUCAUUUUAUGUCCAUAC-CCCCAAAGGUAAAAUAACACUAAAACAAAAGCUCGCGGGCGGUGGUGUUCUCUACACGGAG
((.((((.......((((...(((((..(.((((.((((.....)))))))))...)-))))..))))....................(((....)))))))((((.....)))))).. ( -32.40)
>DroEre_CAF1 21751 116 - 1
CCACACCCAGAAUAACCUCGCGGGGGCGGAGGCAAUAAAAUCAUUUUAUAUCCCCACUCCCCAAAGGUAAAAUAACACUAAAACAAAAGCUUGCGGGCGG---AGCUCUCUACAGAGAG
...(.(((......((((...(((((.((.((..(((((.....)))))..)))).)))))...))))...............(((....))).))).).---..(((((....))))) ( -28.80)
>DroYak_CAF1 22060 114 - 1
CCACACCCAAAAUAACCUCGCGGGGGCGGAGGCAAUAAAAUCAUUUUAUAUCCAUAC-CCCCAAAGGUAAAA-AACACUAAAACAAAAGCUUGCGAGCAG---CGCUCUCGACAGAGAG
................((((((((((.(((....(((((.....))))).)))...)-))))...(((....-...))).............)))))...---..(((((....))))) ( -26.60)
>consensus
CCACACCCAAAAUAACCUCGCGGGGGCGGAGGCAAUAAAAUCAUUUUAUAUCCAUAC_CCCCAAAGGUAAAAUAACACUAAAACAAAAGCUCGCGAGCGG___UGCUCUCUACACAGAG
................((((((((((.(..((..(((((.....)))))..))...).))))...(((........)))............))))))........(((((....))))) (-21.12 = -20.75 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:01 2006